Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu03g1432 | ATGAGAGCCAGCGTAAGAAAGATTGGCCTTGTGAGCATTTCTTGGGGGGATATGGAGAAGGATTTACGGTCAAAAGAAAAGGAGCGAGTTTTCTTCCCAGCCCTCGGTGGTAGGAAGAGGTTCAAGCAAGCAGTGGCAGTTAATCATGAACTTCCACAAAAGAGCTTTAGTGTCACCAGCAAACTATCTTCCGTTTTCTTTGAAAGCATTAGCATCATCAACTCCTCTAGGCAAACAAAAGACAATGTGTCTAATCAGCGTGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAACCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTACGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTGGCAAGGAAAAGAAGCTATTATTTATTTCCTTATACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTTCCAGAATGCTTATGCTACATATTTCACCATATGGTTTGGGAAATGGATGAGGTACTGATGCATCAGATTGTGCAGCCGGCCAAGAGCTGTGAGTCTAAAGATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTACGAGGTTCTGGCTGCTCTCTTCAAACTTGGCATGCCAAACCTTTAG | 699 | 42.2 | MRASVRKIGLVSISWGDMEKDLRSKEKERVFFPALGGRKRFKQAVAVNHELPQKSFSVTSKLSSVFFESISIINSSRQTKDNVSNQREHVVHLLANEQSRLRILEETEPKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVGKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVWEMDEVLMHQIVQPAKSCESKDGVSFLDQVICPLYEVLAALFKLGMPNL | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 27607211 | 27612753 | + | ClG42_03g0143200.10 | Clacu03g1432 | 245997 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu03g1432 | 232 | Pfam | 1,3-beta-glucan synthase subunit FKS1, domain-1 | 151 | 224 | IPR026899 | - | |
| Clacu03g1432 | 232 | PANTHER | LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 | 55 | 222 | - | GO:0005886(PANTHER)|GO:0046527(PANTHER) | |
| Clacu03g1432 | 232 | SMART | FKS1_dom1_2 | 149 | 232 | IPR026899 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1432 | Clacu-Chr3:27607211 | Clacu03g1439 | Clacu-Chr3:27721948 | 3.20E-75 | dispersed | |
| Clacu03g1429 | Clacu-Chr3:27500494 | Clacu03g1432 | Clacu-Chr3:27607211 | 3.30E-74 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu03g1432 | K11000 | - | csv:101216435 | 276.559 |