Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1434 ATGCCTTCTGATATGCTTGGTAGAAGTCGCCATCAAGGGAAAACGTCATTTGTTGAGCATCGGACTTTTCTTCATCTTTATCATAGTTTCCATCGCTTATGGATATTTTTGGTCATGACGTTTCAGGCTCTGACCATTGTTGCATTTAACAATGGAAGCTTTAATATGAAGACCCTGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTGATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATACTCTACTTCATGGCGTCTTTTTGTTTCTCGAATTCTTCGTTTTCTTTGGTTTAGTACTGCATCAGCTTCGACAACATTTCTTTATGTGAAAGCTCTTCAGGAGGGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCTCAATATCCTCATGCATATACCTGCTTGCCGTCTTTTAACAAATCAATGTGATTGGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGCTCTGGATATTGATGAGAATATTAGCACATCTGACAACCAAAAGGCTTGGTTAGATCTCAATTATGGCCCATCCTTTTTCAATTCATATGAATATTCAAGAATAAAATCAGGATTTTTGGATCTTAGTTCTTCAATGGAGTTTGTTTTTCGTCTACGGATTAGTTAG 708 38.28 MPSDMLGRSRHQGKTSFVEHRTFLHLYHSFHRLWIFLVMTFQALTIVAFNNGSFNMKTLLEVLSLGPTFVVMKLIESVLDILMMYGAYSTSWRLFVSRILRFLWFSTASASTTFLYVKALQEGSKPNAERVMFRLYVIVIGIYGGVQLCLNILMHIPACRLLTNQCDWWPLVRFFKWMRQALDIDENISTSDNQKAWLDLNYGPSFFNSYEYSRIKSGFLDLSSSMEFVFRLRIS 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27626077 27628886 + ClG42_03g0143400.10 Clacu03g1434 245999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1434 235 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 9 180 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1434 K11000 - - csv:101216435 324.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1434 Clacu-Chr3:27626077 Clacu06g1871 Clacu-Chr6:29135470 2.40E-41 dispersed
Clacu03g1434 Clacu-Chr3:27626077 Clacu03g1439 Clacu-Chr3:27721948 3.00E-84 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu11g1317 . 1 735 Cell Wall Biosynthesis AT5G17420 82.6 0.0e+00 1256.9
Clacu08g0218 . 1 919 Cell Wall Biosynthesis AT5G17420 61.1 0.0e+00 1138.6
Clacu04g0354 . 9 875 Cell Wall Biosynthesis AT5G17420 64.2 0.0e+00 1110.1
Clacu09g0412 . 12 761 Cell Wall Biosynthesis AT5G17420 61.3 1.3e-256 883.2
Clacu05g1852 . 1 678 Cell Wall Biosynthesis AT5G17420 62.2 1.3e-240 830.1
Clacu03g0750 . 487 1077 Cell Wall Biosynthesis AT5G17420 62.6 8.3e-216 747.7
Clacu06g0147 . 1132 1623 Cell Wall Biosynthesis AT5G17420 61.9 5.3e-178 622.1
Clacu06g1871 . 1 1766 Cell Wall Biosynthesis AT3G07160 61.9 0.0e+00 2181.8
Clacu03g1435 . 34 1148 Cell Wall Biosynthesis AT3G07160 70.9 0.0e+00 1601.3
Clacu03g1439 . 1 1123 Cell Wall Biosynthesis AT3G07160 60.7 0.0e+00 1310.0
Clacu03g1440 . 150 932 Cell Wall Biosynthesis AT3G07160 76.3 0.0e+00 1220.3
Clacu03g1429 . 23 802 Cell Wall Biosynthesis AT3G07160 73.6 0.0e+00 1162.1
Clacu03g1432 . 80 223 Cell Wall Biosynthesis AT3G07160 72.0 4.1e-59 228.0
Clacu03g1434 . 7 180 Cell Wall Biosynthesis AT3G07160 65.3 1.3e-57 223.0
Clacu03g1431 . 24 189 Cell Wall Biosynthesis AT3G07160 69.3 2.7e-55 215.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000469 1 5 2 3 3 6 6 7 6 2 5 7 3 2 2 4 6 2 4 7 2 2 2 5 6 5 2 3 4 3 117