Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1439 ATGACTGTCATTAAGCAAACGCTAGCCAAGAGGGAGGGTGGAACCATAGATAGAAGCCATGACATTACTCGGTTACAGGAGTTCTACAAACTATACCAAGAGAAAAATAGTGTAGATAAGCTTTGGGAAGGTGAAATGAAATTGAGGGAATCTGGTGCTTTCAGTGGTAATCTTGGAGAGTTGGAATGGAAAACATTGAAGCGAAAAAAAGGCTTTGCAACCCTGAAAGTATTGGCCATGGTACTGAAGCAACTCAGTGATGCAATTCCTGAAGAGATGAAAAGACTCATGGAATTGGATGCGGCAATGACAGAGGACCTAATTGCATATAATATTATTCCATTAGATGCTCCTTCTATGACAAATGTTATTGGGTCCTTGGCTGAGGTGCAAGCAGCAGTGTCAGCTTTAAAGTATTTCAGTGGCCTTCCAAAGTTGCCTGCAGAATTTTCTATTCCGGAGACTAAGAGTCCTGATATACTTGACTTTCTACACTTCGTTTTTGGATTTCAGAAAGACAATGTGTCTAATCAGCGCGAACATGTAGTGCACCTACTTGCCAATGAACAATCTCGACTTCGTATACTTGAAGAAACTGAATCAAAATTGGATGCAGCTGCTGTGGAGGGTGTTTTTAAGAAGTCTCTGGAAAACTATGTTAAATGGTGTGAATATTTATGCATTCAACCTGTTTGGAGCAGTTTGTCTGCTGTTAGCAAGGAAAAGAAGCTATTATTTATTTCCTTGTACTTTCTTATATGGGGGGAAGCATCCAACGTCAGATTTCTCCCAGAATGCTTATGCTACATATTTCACCATATGGTTCAGGAAATGGATGAAGTATTGAGGCATCGGATTGCGCAGCCAGCCAAGAGCTGTGAGTCTAAATATGGTGTTTCTTTCCTTGATCAAGTTATCTGTCCTCTTTATGAGGTTCTGGCTGCGGAAGCTGCAAACAATAATAATGGGCAGGCACCATATTCTGCATGGAGAAACTATGATGATTTTAACGAGTATTTCTGGTCGCTTAGATGCTTTGACCTCAGTTGGCCATGGCATAAAGGCAAATCTTTTTTTCAAAAGCCAACACCAAAATCAAAGAGTATGCTTGGTAGAAGTCGTCATCAAGGGAAAACGTCATTTGTTGAGCATCGTACTTTTCTTCGTCTTTATCATAGTTTCCATCGTTTATGGATATTTTTGGTTATGACATTCCAGGCTCTGACCATTGTTGCATTTAACAATGGAAACTTTAATATGAAGACATGGCTGGAAGTTCTGAGTCTTGGTCCGACATTTGTTGTAATGAAGTTTATTGAGAGTGTTCTAGACATCCTAATGATGTATGGTGCATATTCTACTTCAAGGCGTATTTTTGTTTCTCGAATTCTTCTTCGTTTTCTTTGGTTCAGTATTGCATCAGCTTTGATAACATTTCTTTATGTGGAAGCTCTTCAGGAAAGGAGTAAACCAAATGCAGAAAGAGTGATGTTCAGACTATATGTAATTGTGATTGGAATATATGGTGGTGTACAGCTTTGTCCCAGTATCCTCATGCATATACCTGCTTGCCGTCTTTTAATGAATCAATGTGATTTGTGGCCTCTTGTTCGCTTTTTCAAGTGGATGCGTCAGGAACGGTACTATGTTGGAAGTGGGATGTATGAGAGGACTACTGACTTTATTAAATACATGCTTCTGTGGATTATCATTCTTGGTGGAAAACTTGCACTTGCTTATTTTCTTCAGATCAAGCCTCTTGTTGGACCTACAAGGCTTATTGTAAATAGGAGAGATATAAGATATTCGTGGCATGACTTTGTGTCTAAAGATAATCATAATGCATTGACTATTCTTAGCTTGTGGGCCCCCGTGGTTGTTATTTACATCTTGGACATCCATGTTTTCTATACTATTATATCGGCCATATGGAGTTTCTTAATTGGGGCAAGAGACCGTCTTGGAGAGATTAGATCATTAGAAGCCATACATAAACTGTTTAATCGGTTTCCTGGAGCTTTTATGGACACTCTACATGTTCCTCTCCAAGACAGGCTTGGGCCTTCGAATCGGTCATTAAGTCAGTCAATTGGAACAGACGGGGAAAAACTCTTGACGATCGATGAGCTGCCAATGAGATGTGAGAGTCTAGCAAGATGTGAAAGACCGATGGCGAACAATCGAAGATGTGAACGACTAGCGGTGACGATGCAGAAGGCGGGGGCGACAGGCAAGGCAGCAGTAATGGCGGCTGCAAAGGATAGGATTTTATGGTTTCAAGAATTAGGGTTAAGTCTTTCAGAATGCTCCTTTGCACTTTGTTTCGGTGGTAGTCCTTTGGGTTGTAGCTACACTCTCCAAGATTTAACTCTTTTTAAAGATCTTCAAAGGATAAGCCTCTTCATTGGATTGCTCGCTTTGGTTAAGTACGGTTTCAAGCCTCTTCATGTTGTTGAGAAAGACAAGTTTGATGCTGCTCGATTTTCTCCCTTCTGGAATGAAATCATAGCAAGTTTACGGGAAGAAGATTATATTACAAACTTGGAAATGGAGTTACTTCAAATGCCTAAAAACAATGGTAATCTTCCCATGGTTCAGTGGCCACTTTTTCTTCTTGTCAGCAAGATATCTCTAGCTAAGGATATTGCTGTTAAAAGACGAGATTCGCAAGACAAGCTGTGGAAGCATATTTCCAGAGATGACTATATGAAATATGCAGTACACGAATGTTACCACGCCATTAAGCTTATCTTAATGGAATTACTAGTTGGGGAAGGAAGGATGTGGGTTGAAAGGGTATTTGAAGACACTGAAGCTAGTTTAGCAAACAATTCCATTCTAAATGACTTCCAGCTAAATAAGTTGCCACTTGTGATTACAAGAGTAACTGCTCTGATGGGTATTTTGAAAGAGCCAGAAACTTCGGAGCTGGAAAAAGAGGCTATTAAGGCTGTTCAAGATTTGTATGATGTTGTGCACCATGATCTCCTTTCCAGTGACAAGAGGGGGCACTATGAAACATGGAACATATTAGTAAAAGCCAGAAATGAAGGTCGTTTGTTTACAAAGTTAAATTGGCCCAAAGATTTAGAATTGAAGTCACAAGTCAAAAGATTGTATTCCTTGTTAACCATTAAAAAGACAACTTTAGATATTCCATTTAACTTTGAGGCCCAACGGAGACTGCAATTCTTTACAAATTCACTTTTCATGGTGATGCCAACTCCAAAACTTGTTCGTCAGATGCTTTCCTTCAGTGTATTCACTCCGTATTATTCTGAGACGGTGCTCTATAGTATGGGGGAACTCCTGAAGAAAAATGAGGATGGGATAACAACCTTGCTTTACCTGCAAAAAATTTATCCAGAGGTTTTATCTCAAGGAATAAGACAATCAAAGGCCACTGATTGGGCTCCACCAAAACAAGGCTTGATGAAGGAGTTATTTTATAAAGATTTCAACAATTCGATAGATCAACACAGAGTGAACAAAGTGGCAGAGGATGAAGTTGGCGGTTTTAACTCAATAAGCCGCGTAAGAAAGGGACGTAAGTTTATTCCATCGTCGGAAAAAGGATTGGAAAAGGCTGAGGATGAAGGAATTGTTGTGCCAGTGGCAAGGAATGCTGAAGGCCAGGCAAGAGACGCGTCTCTTCATATTCTTAGCCAAAAAGCTGAAAAGTCTAATCTGTGTGAGAACAAAGGTGAAGGAGTCGAAAAGTTGGAAGTTAATTGGAGAGAGAATTCCGGCGGCCGCATTTATCGAATTCCAAGGTCGGATGAGGAAGGCATTCAGTCATCTGAGCCAAAATCCCAGCGAGAGTCCCAGCGAGATCCAATCCAGGACTTGACTTGCATCCCTGACTCCCAGCGAGACTCACAGCGAGAACCAAACCGAGAGTCATCTTGCTACCTAGATTCTCAGCGAGAACCATCCCGAGAGTCGACTCGCTGCCCGGACCACCAGCGAGTTTCCCAGCGAAAATCAATGCGGGAATCGACTCTCATCACAGGACCACAGCGAGATTTCCAGTGA 4035 40.99 MTVIKQTLAKREGGTIDRSHDITRLQEFYKLYQEKNSVDKLWEGEMKLRESGAFSGNLGELEWKTLKRKKGFATLKVLAMVLKQLSDAIPEEMKRLMELDAAMTEDLIAYNIIPLDAPSMTNVIGSLAEVQAAVSALKYFSGLPKLPAEFSIPETKSPDILDFLHFVFGFQKDNVSNQREHVVHLLANEQSRLRILEETESKLDAAAVEGVFKKSLENYVKWCEYLCIQPVWSSLSAVSKEKKLLFISLYFLIWGEASNVRFLPECLCYIFHHMVQEMDEVLRHRIAQPAKSCESKYGVSFLDQVICPLYEVLAAEAANNNNGQAPYSAWRNYDDFNEYFWSLRCFDLSWPWHKGKSFFQKPTPKSKSMLGRSRHQGKTSFVEHRTFLRLYHSFHRLWIFLVMTFQALTIVAFNNGNFNMKTWLEVLSLGPTFVVMKFIESVLDILMMYGAYSTSRRIFVSRILLRFLWFSIASALITFLYVEALQERSKPNAERVMFRLYVIVIGIYGGVQLCPSILMHIPACRLLMNQCDLWPLVRFFKWMRQERYYVGSGMYERTTDFIKYMLLWIIILGGKLALAYFLQIKPLVGPTRLIVNRRDIRYSWHDFVSKDNHNALTILSLWAPVVVIYILDIHVFYTIISAIWSFLIGARDRLGEIRSLEAIHKLFNRFPGAFMDTLHVPLQDRLGPSNRSLSQSIGTDGEKLLTIDELPMRCESLARCERPMANNRRCERLAVTMQKAGATGKAAVMAAAKDRILWFQELGLSLSECSFALCFGGSPLGCSYTLQDLTLFKDLQRISLFIGLLALVKYGFKPLHVVEKDKFDAARFSPFWNEIIASLREEDYITNLEMELLQMPKNNGNLPMVQWPLFLLVSKISLAKDIAVKRRDSQDKLWKHISRDDYMKYAVHECYHAIKLILMELLVGEGRMWVERVFEDTEASLANNSILNDFQLNKLPLVITRVTALMGILKEPETSELEKEAIKAVQDLYDVVHHDLLSSDKRGHYETWNILVKARNEGRLFTKLNWPKDLELKSQVKRLYSLLTIKKTTLDIPFNFEAQRRLQFFTNSLFMVMPTPKLVRQMLSFSVFTPYYSETVLYSMGELLKKNEDGITTLLYLQKIYPEVLSQGIRQSKATDWAPPKQGLMKELFYKDFNNSIDQHRVNKVAEDEVGGFNSISRVRKGRKFIPSSEKGLEKAEDEGIVVPVARNAEGQARDASLHILSQKAEKSNLCENKGEGVEKLEVNWRENSGGRIYRIPRSDEEGIQSSEPKSQRESQRDPIQDLTCIPDSQRDSQREPNRESSCYLDSQREPSRESTRCPDHQRVSQRKSMRESTLITGPQRDFQ 1344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27721948 27773266 + ClG42_03g0143900.10 Clacu03g1439 246004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1439 1344 MobiDBLite consensus disorder prediction 1292 1328 - -
Clacu03g1439 1344 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 7 1123 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Clacu03g1439 1344 MobiDBLite consensus disorder prediction 1254 1344 - -
Clacu03g1439 1344 SMART FKS1_dom1_2 241 353 IPR026899 -
Clacu03g1439 1344 MobiDBLite consensus disorder prediction 1329 1344 - -
Clacu03g1439 1344 Pfam 1,3-beta-glucan synthase component 1053 1136 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Clacu03g1439 1344 MobiDBLite consensus disorder prediction 1254 1277 - -
Clacu03g1439 1344 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 243 350 IPR026899 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1429 Clacu-Chr3:27500494 Clacu03g1439 Clacu-Chr3:27721948 0.00E+00 dispersed
Clacu03g1431 Clacu-Chr3:27594784 Clacu03g1439 Clacu-Chr3:27721948 1.10E-77 dispersed
Clacu03g1432 Clacu-Chr3:27607211 Clacu03g1439 Clacu-Chr3:27721948 3.20E-75 dispersed
Clacu03g1439 Clacu-Chr3:27721948 Clacu06g1871 Clacu-Chr6:29135470 8.20E-296 dispersed
Clacu03g1434 Clacu-Chr3:27626077 Clacu03g1439 Clacu-Chr3:27721948 3.00E-84 proximal
Clacu03g1435 Clacu-Chr3:27665465 Clacu03g1439 Clacu-Chr3:27721948 2.00E-157 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1439 K11000 - csv:101216435 1246.49