Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1440 ATGGAACTAGATCAACGCGCATTTATTATTGATTCAAGCATTAAAAGCAATAATAAAGAGAGAGAAATTGAAAAGACGCTTGAAGAGGAAAAGGCAGCCGGTTTAATCCAGCGTGTGGCCAATAAAAAGGGGTTGGAAGGTATATTAAATGATGGAGTAAATGAGGAATTATGCCTTAAACTCCACCGGCCTAATCGATTCGCATTTCCGCAGAACAATTCAAAGGATATACAAGATGTTTTCGAAAAGTCACATGCAGGAAGTTTGGGCGACGACATTAATACGCGTGCATTAAATAATGTGGTATTCCAAGAACCAATGACAGCAATGACAGAAGGAACTGTCACTCCTTCCGAAGCCTCTCCGAATCCTCAATCGGTTTCTCCATCTCCTTTATCCTTTGGCATCATTCCAAGACTAGAATGGACATCAATTCCCAAGAGCGATAATGAGTGGAAGAACTTTCTTGCTCGAATTGGCCGAGATGAGAATGAAGTTGACCCAGAATCGTTTGATAATCCTAATGACATCCTTGCATTGCGATTTTGGGCCTCTTATCGAGGACAGACATTAGCAAGAACAGACTTCAAAGCTGCCATTCCTTGTACTGATGCTACTGATACTCGGGGTTTCGATTTATCTCCTGAAGCACGTGCACTAGCAGATCTTAAATTTACATATGTTGTGACATGTCAGATATATGGCAGACAAAGAGAACAACAAAAACCAGAGGCCGCTGACATTGCATTGCTTATGCAAAGAAATGAAGCCCTTCGTGTTGCCTACATCGATGATATTGAAACCCTGAAGGATGGTAAGGTGCACAAAGAATTTTACTCAAAGCTTGTAAAGGCTGATATCAATGGAAAAGATAAGGAGATATATTCAATCAAATTGCCTGGAGATCCAAAGTTGGGTGAAGGAAAGCCTGAGAATCAAAACCATGCTATTGTTTTTACTCGTGGAAATGCTATTCAGACAATTGATATGAATCAGGATAATTACTTTGAAGAAGCATTGAAGATGAGAAATCTTCTCGAGGAATTTGATCATTATCATGGTATTCGTCCTCCTACCATACTAGGTGTCAGGGAACATGTATTTACGGGGAGTGTTTCATCTCTTGCTTCATTCATGTCAAATCAAGAAGCTACTTTTGTGACTCTTGGTCAACGTATTCTGGCAAATCCCTTGAAAGTGCGTATGCATTATGGCCATCCAGATGTTTTTGATAGAGTTTTTCATCTAACACGAGGTGGCATCAGCAAGGCCTCCCGTGTTATCAACATTAGTGAAGATGTCTTTGCAGGATTTAATACAACATTGAGGCAAGGGAACGTTACTCATCATGAGTATATTCAGGTCGGTAAAGGACGAGATGTTGGTCTTAACCAGATTACTCTTTTCGAAAGAAAGGTTGCTGGTGGTAATGGAGAACAAGTTCTTAGCCGAGATGTATACAGGCTTGGCCAACTGTTTGATTTTTTCCGGATGATGTCATTCTATTTCACCACTGTTGGCTACTACTTTTGTACTATGTTAACAGTGCTAACTGTATACATTTTTCTCTATGGAAAAGCATATTTGGCACTATTTGGAGTTGGTGACACCATTGAAGATGGAGCTAATATTGCAAATATTATCACATTGTCAACTACTTTGAATACACAGTTCCTCATCCAAATTGGTATTTGCACTGTCGTGCCGATCTTAGGATTCATATCAGAGCAAGGTTTCTTCAAGACTATTGTCAGCTTCATAACCATGCAGCTTCAGCTTTGTTCTATCTTCTTCACATTCTCTCTTTGCACAAAAACTCACTATTTTGGCCGAACAATTCTTCATGGCGGTGCAAAGTATCAAGCAACTGGAAGGGGATTGGTGGTTCGCCATATCAAATTCTCTGAAAATTACAGATTGTACTCCCGCAGCCATTTTGTTAGAGGATTGGAAGCTGTGCTTCTGTTGGTTGTATACATGGCCTATGGATATAGTTCAGGTGGTTCATTAGCATACATCCTTGTAACTCTTAACACTTGGTTCATGGCAATATCTTGGCTTTTTGCTCCCTATCTGTTCAATCCATCTGGGTTTGAGTGGCAGAAGACTGTGGAGGATTTCAGGGAATGGACCAATTGGCTCTTTTACCGAGGTGGAGTTGGTGTTAAGGGTGAAGAAAGTTGGGAATCATGGTGGGACTCAGAACTGGCACATATAAAAACCATTGAAGGGCGGATAGCAGAGACAATTTTAAATCTAAGATTCTTTCTTTTTCAATATGGAATTGTTTATAAGCTCCATGCACAAGGATCAAACACATCAGTGTCGGTATATGGGTTCTCCTGGATTGTGTTAGCTTGGCTTATAGTTCTTTTCAAGGTGTTTGCCTTCAGCCAGAAGATTTCGGTCAATTTTCAGTTTTTGTTGCGATTTATCCAAGGTCTTTTCTTCCTTTTGACACTGGCTGGCCTGGCAGTTGCATTTGCTATTATGGATTTGTCAATGTTTGATGTACTTGCTTGCATCTTGGCATTTGTACCTACAGGATGGGGCATTCTTTCTATTGCAGTAGCTTGGAAACCTTTAATAGAGAAACTTGGACTCTGGAAATCCATTTGCTCAATTGCTCGGCTGTACGATGCCGGGATGGGGATGCTCATCTTTATCCCCATTGCATGCCTTTCATGGCTTCCATTTGTATCAACATTCCAAAATTTTCTTATGTTCAACAAGGCTTTCAGTCGAGGGCTTGAGATCTGTCTAACTCTTGCTGGAAAAAAACCCAACACTGCACTATGA 2799 40.48 MELDQRAFIIDSSIKSNNKEREIEKTLEEEKAAGLIQRVANKKGLEGILNDGVNEELCLKLHRPNRFAFPQNNSKDIQDVFEKSHAGSLGDDINTRALNNVVFQEPMTAMTEGTVTPSEASPNPQSVSPSPLSFGIIPRLEWTSIPKSDNEWKNFLARIGRDENEVDPESFDNPNDILALRFWASYRGQTLARTDFKAAIPCTDATDTRGFDLSPEARALADLKFTYVVTCQIYGRQREQQKPEAADIALLMQRNEALRVAYIDDIETLKDGKVHKEFYSKLVKADINGKDKEIYSIKLPGDPKLGEGKPENQNHAIVFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFDHYHGIRPPTILGVREHVFTGSVSSLASFMSNQEATFVTLGQRILANPLKVRMHYGHPDVFDRVFHLTRGGISKASRVINISEDVFAGFNTTLRQGNVTHHEYIQVGKGRDVGLNQITLFERKVAGGNGEQVLSRDVYRLGQLFDFFRMMSFYFTTVGYYFCTMLTVLTVYIFLYGKAYLALFGVGDTIEDGANIANIITLSTTLNTQFLIQIGICTVVPILGFISEQGFFKTIVSFITMQLQLCSIFFTFSLCTKTHYFGRTILHGGAKYQATGRGLVVRHIKFSENYRLYSRSHFVRGLEAVLLLVVYMAYGYSSGGSLAYILVTLNTWFMAISWLFAPYLFNPSGFEWQKTVEDFREWTNWLFYRGGVGVKGEESWESWWDSELAHIKTIEGRIAETILNLRFFLFQYGIVYKLHAQGSNTSVSVYGFSWIVLAWLIVLFKVFAFSQKISVNFQFLLRFIQGLFFLLTLAGLAVAFAIMDLSMFDVLACILAFVPTGWGILSIAVAWKPLIEKLGLWKSICSIARLYDAGMGMLIFIPIACLSWLPFVSTFQNFLMFNKAFSRGLEICLTLAGKKPNTAL 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27773297 27795589 + ClG42_03g0144000.10 Clacu03g1440 246005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1440 932 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 150 927 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Clacu03g1440 932 Pfam 1,3-beta-glucan synthase component 173 747 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1440 Clacu-Chr3:27773297 Clacu06g1871 Clacu-Chr6:29135470 4.40E-280 dispersed
Clacu03g1435 Clacu-Chr3:27665465 Clacu03g1440 Clacu-Chr3:27773297 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1440 K11000 - csv:101216435 1407.89