Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1453 ATGCTCGGGATGGCGGCGGAGGCAGTGACAACCATGGCGGTCGTGGCGGTGGCCGGGTGGTTGCTATTTGGAGTTGAGGGTAGACAGCCAGTGTTGCATAGGGTTGGAGGAGGAAAATATACTTGGACACCTAATATTAACTTCACTGATTGGTCAATTCATGAACACTTTTATGTTGGTGATTGGCTTTATTTTGGGTTTGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGGGTTGCAACGACAAGGATTTCATTTTCAACATAACAAGGGGAGGGAGAGATGTGTTCAATCTAACAGAAGCAAAAACATATTACTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAGTACTCTCCTCCCATTTCACCACCAAATTTACCCAATACTTCTCCATCTTTACATTCATTAATATGGCCTTTCTCCCTCTTGCTATCCATCAACATTTCCATGGCCAATTCCTTCTTCTAA 513 42.11 MLGMAAEAVTTMAVVAVAGWLLFGVEGRQPVLHRVGGGKYTWTPNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYEGCNDKDFIFNITRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPPISPPNLPNTSPSLHSLIWPFSLLLSINISMANSFF 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28071494 28072604 - ClG42_03g0145300.10 Clacu03g1453 246018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1453 170 Gene3D - 31 133 IPR008972 -
Clacu03g1453 170 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
Clacu03g1453 170 PANTHER BLUE COPPER PROTEIN 17 130 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Clacu03g1453 170 FunFam Lamin-like protein 29 132 - -
Clacu03g1453 170 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055(InterPro)
Clacu03g1453 170 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1453 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1453 Clacu-Chr3:28071494 Clacu10g1537 Clacu-Chr10:28652049 2.60E-37 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1536 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.3e-38 155.6
Clacu08g1533 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.5e-43 172.9
Clacu10g1536 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.1e-47 185.7
Clacu08g1533 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 7.8e-45 177.2
Clacu04g1197 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Clacu04g1197 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Clacu08g1533 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.5e-43 172.9
Clacu08g1533 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 7.8e-45 177.2
Clacu10g1536 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.3e-38 155.6
Clacu10g1536 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.1e-47 185.7
Clacu02g2315 . 11 229 Phytocyanin Superfamily AT1G08500 55.9 8.2e-63 237.3
Clacu03g1453 . 29 144 Phytocyanin Superfamily AT2G27035 58.6 2.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49