Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1455 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCTGCTCCAATTGTGGAAGGAGATTCTGGAGCTCCACCAACTGATCCTGAAGTCGTGGTGGAAGATGATTATTCTGATGAAGAGATCGATGTCGATGAGCTCGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGCCTTAAAGAGCAAAGCAAGGTTAAGGAAGGGATTGATATTGTGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCACATGATGGGATCTTGAAGTATATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCTGAGAAGGGAAAACCTGTAACTGGTGCATCAGATAATCTGCGAGAATGGTGGAAAGACAAGGTCAGATTTGATAGAAACGGACCGGCTGCCATAGCCAAGTACCAGGCAGACAATGCAATTCCCGGACGAAACGATGGGTGTAATTCAATTGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACCACCCTAGGATCTCTTTTATCAGCTCTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGTGTTCCTCCGCCATGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGCCGAAGGACCAAGGTCCTCCACCGTACAAGAAGCCTCATGACTTGAAGAAAGCGTGGAAAGTCGGTGTTTTGACTGCAGTCATCAAGCATATGTCCCCTGATATAGCCAAGATCCGCAAGCTTGTTAGACAGTCCAAGTGTTTGCAGGACAAGATGACCGCCAAGGAGAGTGCGACATGGCTTGCTATTATCAACCAGGAGGAGATCTTGGCCCGGGAGCTTTATCCCGACTCTTGCCCGCCTCTGTCTTCCGGTGGGGGTAGTGGATCATTGGTCATTAACGATTGCAGCGAATACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGAAAACCTGATAACCATGGCTCATTCAACTTGGGAATGGACAGAATGAGAGAACGGGTGCCCCTTCGACAACCACCTTATGCAATCAAAGGAGAGGTTCCTGCAAACTTGGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAATATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAACTTCGTCTCGGGTTTAATGACAGGACATCCAGAGACAATCATCAGTTGACCTGTACATATAGAACTTCTTCAGAATTCAGTGGCTCAAGTTTTCATGTCAACGAGGTTAAACCGGTTATCTTCCCTCAGTCGTTTGCCCCACCCAAGTCAGCTCCACCGCCGGTCAGCTCAGTTCCATCATCCTTCGACCTGTCTGCTTTAGGCGTTCCAGAAGATGGCCAAAAGCTGATCAGTGAGCTCATGTCTATCTATGACACCAACATCCAAGGCAACAAGAACAACGTAAACACCGGTAATGGTGCCATCACGGAAAACCAAAATCTTTCTCAGTTAAAGATCCAACCTCAACAAGACGAATACTTCCGCAATCAAGGTCTAATGATCGAGGGAAACTTCTTCGAGGGTTCAAATGTTTCGAGCAGCCATCAAATGTTCACAAGAGATGAAGGCCAATTCGACCGGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCATCAGCACAACAATAACAACAACAACAATTTCCACTTAATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGAGTAGCAGCCATCGATACACTGTCGAAACAGCAGGACATTACATTATGGTATCATTGA 1884 46.44 MMMMFNEMGFCDDMDFLSAPIVEGDSGAPPTDPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIVKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEILARELYPDSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHGSFNLGMDRMRERVPLRQPPYAIKGEVPANLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLTCTYRTSSEFSGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSALGVPEDGQKLISELMSIYDTNIQGNKNNVNTGNGAITENQNLSQLKIQPQQDEYFRNQGLMIEGNFFEGSNVSSSHQMFTRDEGQFDRFKPMNSPFENNHHQHNNNNNNNFHLMFGSPFDLSTFDYKEEVPGVAAIDTLSKQQDITLWYH 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28091388 28093271 + ClG42_03g0145500.10 Clacu03g1455 246020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1455 627 Coils Coil 48 68 - -
Clacu03g1455 627 FunFam Ethylene insensitive 3-like 1 81 159 - -
Clacu03g1455 627 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu03g1455 627 MobiDBLite consensus disorder prediction 336 354 - -
Clacu03g1455 627 MobiDBLite consensus disorder prediction 334 354 - -
Clacu03g1455 627 Gene3D - 81 158 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu03g1455 627 Gene3D - 173 306 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu03g1455 627 FunFam Ethylene insensitive 3-like 1 169 306 - -
Clacu03g1455 627 Pfam Ethylene insensitive 3, DNA-binding domain 49 296 IPR047091 GO:0003700(InterPro)
Clacu03g1455 627 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 3 615 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1455 Clacu-Chr3:28091388 Clacu08g1013 Clacu-Chr8:20162505 1.80E-197 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47445 PF04873 EIN3 3.50E-129 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1455 K14514 - csv:101206055 1149.04