Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1531 ATGGCACTGGAAAAGATCATCGCCGATGCCAATAAATGGCATAGCGGTCTAATTTCTCCGATAAAACCCATTTTCCACTGCTGGGGCTGCTTACAAGTTGCTAGGGTTTATCTTCTTCCTCCTTCTGTAATCTTCTATACCGTTGGAGCCGCTTCTCTATCTTTATCTTCAGAACGTGAAATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCCTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCCGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTGCCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGATGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGAGGCAAAATTAATGTAAAGGATATAAGCCTGAGAAACTCGGTAGCTTGTTTGGGAATGTTTGGCAAGACTGTTGTCTGTTCTTTGGCTCCAAATTTGTTCATAGGTGCTTCTCTTTTAGATGCTATGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGAGGATTGA 2172 43.0 MALEKIIADANKWHSGLISPIKPIFHCWGCLQVARVYLLPPSVIFYTVGAASLSLSSEREMAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLRRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKGVNVYMMKWDSDHGLMIINHYDYRGKINVKDISLRNSVACLGMFGKTVVCSLAPNLFIGASLLDAMIVISSKMVQDQSQFHED 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28912212 28925724 - ClG42_03g0153100.10 Clacu03g1531 246096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1531 723 FunFam 10 kDa chaperonin 220 310 - -
Clacu03g1531 723 SMART Cpn10_2 221 313 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 SMART Cpn10_2 123 214 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 Hamap Co-chaperonin GroES [groES]. 123 215 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 PANTHER EXPRESSED PROTEIN 371 614 - -
Clacu03g1531 723 CDD cpn10 222 309 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 Gene3D GroES chaperonin 117 217 IPR037124 GO:0006457(InterPro)
Clacu03g1531 723 Gene3D GroES chaperonin 218 310 IPR037124 GO:0006457(InterPro)
Clacu03g1531 723 PRINTS 10kDa chaperonin signature 180 192 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 PRINTS 10kDa chaperonin signature 146 167 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 PRINTS 10kDa chaperonin signature 124 139 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 PRINTS 10kDa chaperonin signature 201 214 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 FunFam 20 kDa chaperonin, chloroplastic 117 216 - -
Clacu03g1531 723 ProSitePatterns Chaperonins cpn10 signature. 124 148 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Clacu03g1531 723 SUPERFAMILY GroES-like 221 309 IPR011032 -
Clacu03g1531 723 Hamap Co-chaperonin GroES [groES]. 221 315 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 ProSitePatterns Chaperonins cpn10 signature. 222 246 IPR018369 GO:0005524(InterPro)|GO:0006457(InterPro)
Clacu03g1531 723 SUPERFAMILY GroES-like 122 215 IPR011032 -
Clacu03g1531 723 Pfam Chaperonin 10 Kd subunit 222 309 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 Pfam Chaperonin 10 Kd subunit 124 213 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
Clacu03g1531 723 CDD cpn10 123 214 IPR020818 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1531 Clacu-Chr3:28912212 Clacu06g0003 Clacu-Chr6:280133 2.50E-41 dispersed
Clacu03g1531 Clacu-Chr3:28912212 Clacu05g0328 Clacu-Chr5:2832980 4.50E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1531 K04078 - csv:101212396 454.521