Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g1531 | ATGGCACTGGAAAAGATCATCGCCGATGCCAATAAATGGCATAGCGGTCTAATTTCTCCGATAAAACCCATTTTCCACTGCTGGGGCTGCTTACAAGTTGCTAGGGTTTATCTTCTTCCTCCTTCTGTAATCTTCTATACCGTTGGAGCCGCTTCTCTATCTTTATCTTCAGAACGTGAAATGGCCGCAGCTCAGCTCACTGGGTCCTTAATTTCTGCGAGGAATTTGCCTTCTTTCAATGGCCTTCGTCCTTCTGCCGTGAAATTCTCTCCTTCGGTTGCCCATGTTAGAGTCGGGGGTTTGGCCAACAGATCCTTCACTGGCTTGGTCGTCAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGTGATAGAGTGTTGGTGAAGTTAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTACTTCCAACAACAGCTCAGTCGAAACCCCAAGGAGGGGAGGTCGTTGCAGTTGGAGAAGGCAAGACAATTGGAAATACCAAAGTGGAAGCAAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCCAAGTATGCTGGAACTGAGTTAGAATTCAATGGTTCAAAGCATCTTATTCTCAAGGAAGATGATATAGTTGGTATCCTAGAGACAGATGATGCGAAAGATCTTCAGCCCCTAAACGACCGGGTCTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCAGGAGGTTTATTGTTGACAGAGGCAACCAAAGAGAAGCCTTCCATCGGAACGGTGATCGCAGTTGGTCCTGGTCCTTTGGACGAGGAGGGCAAAAGGAAACCGCTATCTATCGCAGTGGGAAACAACGTGATGTACTCAAAGTACGCCGGGAATGAGTTCAAAGGCAAAGATGGCTCTGATTACATCGCCTTGAGGGCTTCAGACGGGGGAATTGAGATGGATTTTGAGAGACGTAGAAGAGAATTGAAAAAGGCAACTGAGATGGAAATTTCGACCATCGCCGTTCTCCTTCTCCGCCGGCGACATAGAGCCCCTGCCTTCTCTGCCTCTCCAATTTCTCCGACGACTTATCTCTCGTTTGCTTCCACTTTCCTATTGAAACAATCGATGGGTTCAGACGAGGAGGTTGTGGAAATTAGTAGCTTGGAAAGGGGTTTATTGTCAGAATGCAGTTCTGATTTGGAACCTGAAAGTGATGATGAGCCTGTGTTGTTTGCAGCTTCCTTCCAAGAGATGGAAGACAACTTTGTAAAGTATCATACAGCACAATGGGTCCTTTACTCCTTGCTTTTGATTTTAGCGTGGGGGATTGGGTTGTTGATGCTGCTTTATCTACCAGTAAGAAGATACATTCTGCGGAAAGATATTCAATCGAAGAAGCTTTATCTTACACCGAATTCCATAATCTACAAGGTTACAAGACCTGTGCCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTTTGTTGCATTCAGTGGCAGACATTATAATTGAACAAGGATATTTAGAGTCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGACGACCACCTGGTGATGATGTTCAAATTCAAGGAATTACAGATCCAATTGCATTTAAAAAGGCTGTTCTAATGCGTCTTTCTGGTATGAGAGATGATGGCAACTCTTCTCAAATTTCTACAATTGAAGAAGTTTTAAATACAAAGTCATCCCCATCTAAATCTCTAAAGTATGACCCGTATTTATATTCGGGGGAACAAGTACTTCAGAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATCGAAGAGCAACGGTCACAATTCATGTATAGTACGAATAAGCATATCACTGATTATAGTACCAATAAGCACATCACTGATTCTGGTCCTGTCAAAAAGGGAGTAAATGTCTATATGATGAAATGGGATTCAGATCATGGATTGATGATAATCAACCATTATGACTATAGAGGCAAAATTAATGTAAAGGATATAAGCCTGAGAAACTCGGTAGCTTGTTTGGGAATGTTTGGCAAGACTGTTGTCTGTTCTTTGGCTCCAAATTTGTTCATAGGTGCTTCTCTTTTAGATGCTATGATTGTGATCAGCTCCAAAATGGTACAAGACCAGTCCCAATTTCATGAGGATTGA | 2172 | 43.0 | MALEKIIADANKWHSGLISPIKPIFHCWGCLQVARVYLLPPSVIFYTVGAASLSLSSEREMAAAQLTGSLISARNLPSFNGLRPSAVKFSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKLKEAEEKTDGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGKRKPLSIAVGNNVMYSKYAGNEFKGKDGSDYIALRASDGGIEMDFERRRRELKKATEMEISTIAVLLLRRRHRAPAFSASPISPTTYLSFASTFLLKQSMGSDEEVVEISSLERGLLSECSSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDIQSKKLYLTPNSIIYKVTRPVPFPCFGVLKKEKHVLLHSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVQIQGITDPIAFKKAVLMRLSGMRDDGNSSQISTIEEVLNTKSSPSKSLKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEQRSQFMYSTNKHITDYSTNKHITDSGPVKKGVNVYMMKWDSDHGLMIINHYDYRGKINVKDISLRNSVACLGMFGKTVVCSLAPNLFIGASLLDAMIVISSKMVQDQSQFHED | 723 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28912212 | 28925724 | - | ClG42_03g0153100.10 | Clacu03g1531 | 246096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g1531 | 723 | FunFam | 10 kDa chaperonin | 220 | 310 | - | - | |
Clacu03g1531 | 723 | SMART | Cpn10_2 | 221 | 313 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | SMART | Cpn10_2 | 123 | 214 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | Hamap | Co-chaperonin GroES [groES]. | 123 | 215 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | PANTHER | EXPRESSED PROTEIN | 371 | 614 | - | - | |
Clacu03g1531 | 723 | CDD | cpn10 | 222 | 309 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | Gene3D | GroES chaperonin | 117 | 217 | IPR037124 | GO:0006457(InterPro) | |
Clacu03g1531 | 723 | Gene3D | GroES chaperonin | 218 | 310 | IPR037124 | GO:0006457(InterPro) | |
Clacu03g1531 | 723 | PRINTS | 10kDa chaperonin signature | 180 | 192 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | PRINTS | 10kDa chaperonin signature | 146 | 167 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | PRINTS | 10kDa chaperonin signature | 124 | 139 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | PRINTS | 10kDa chaperonin signature | 201 | 214 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | FunFam | 20 kDa chaperonin, chloroplastic | 117 | 216 | - | - | |
Clacu03g1531 | 723 | ProSitePatterns | Chaperonins cpn10 signature. | 124 | 148 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
Clacu03g1531 | 723 | SUPERFAMILY | GroES-like | 221 | 309 | IPR011032 | - | |
Clacu03g1531 | 723 | Hamap | Co-chaperonin GroES [groES]. | 221 | 315 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | ProSitePatterns | Chaperonins cpn10 signature. | 222 | 246 | IPR018369 | GO:0005524(InterPro)|GO:0006457(InterPro) | |
Clacu03g1531 | 723 | SUPERFAMILY | GroES-like | 122 | 215 | IPR011032 | - | |
Clacu03g1531 | 723 | Pfam | Chaperonin 10 Kd subunit | 222 | 309 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | Pfam | Chaperonin 10 Kd subunit | 124 | 213 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) | |
Clacu03g1531 | 723 | CDD | cpn10 | 123 | 214 | IPR020818 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0044183(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu03g1531 | Clacu-Chr3:28912212 | Clacu06g0003 | Clacu-Chr6:280133 | 2.50E-41 | dispersed | |
Clacu03g1531 | Clacu-Chr3:28912212 | Clacu05g0328 | Clacu-Chr5:2832980 | 4.50E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g1531 | K04078 | - | csv:101212396 | 454.521 |