Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1532 ATGACGAAGCCGTCGTCCCCTCACAAATCCTCCGCCGCCGCCGTTGACACTTCCGATTCACGGTACAAGGGAGTACGGCGCCGGAAATGGGGCAAATGGGTTTCCGAAATCCGTCTCCCCAACAGCCGCGAGCGGATCTGGTTAGGTTCTTATGATTCAGCCGAGAAAGCGGCGCGTGCATTCGACGCGGCACTATTTTGCTTACGTGGCCGTTCCGCTCGTTTCAATTTCCCAGATAACCCACCGGAAATTGCCGGTGCTAGTTTGCTCTCCCGAGCAGAGATTCAATCCGTCGCTGCCCAATTCGCTAACTCCGACCCACCACCCTCGTCGGAATGTACACGACCCGCCGTCGATTCGCCGTCGGTGGTTTCCGAAGTGACTACCTCTGTAATTGAATGTGATGAAAGATCGCCGTTTTTGGATCTTCACACCGCCATGGGATCGGGAAATTACGGGTCGGATTTCGGGTTATTTCCGGAATATAATCCGTTTTATAATGAAATGTTTATTAATGGTTCTTCTTCTTCAACAACAGCTCCTTGTTTTGATTATGGAGATGAGAATTTTGACGCCATCACCACTCATCAAGATTCATCATTCCTCTGGAATTTCTGA 618 50.49 MTKPSSPHKSSAAAVDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGRSARFNFPDNPPEIAGASLLSRAEIQSVAAQFANSDPPPSSECTRPAVDSPSVVSEVTTSVIECDERSPFLDLHTAMGSGNYGSDFGLFPEYNPFYNEMFINGSSSSTTAPCFDYGDENFDAITTHQDSSFLWNF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28933769 28934386 + ClG42_03g0153200.10 Clacu03g1532 246097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1532 205 SUPERFAMILY DNA-binding domain 20 80 IPR016177 GO:0003677(InterPro)
Clacu03g1532 205 MobiDBLite consensus disorder prediction 1 17 - -
Clacu03g1532 205 Pfam AP2 domain 20 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Clacu03g1532 205 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu03g1532 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 126 IPR051032 -
Clacu03g1532 205 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1532 Clacu-Chr3:28933769 Clacu08g0697 Clacu-Chr8:16669373 3.10E-21 dispersed
Clacu05g1744 Clacu-Chr5:26397321 Clacu03g1532 Clacu-Chr3:28933769 4.10E-31 transposed
Clacu08g1130 Clacu-Chr8:21294238 Clacu03g1532 Clacu-Chr3:28933769 1.80E-32 transposed
Clacu03g1532 Clacu-Chr3:28933769 Clacu07g1441 Clacu-Chr7:29098278 2.00E-15 wgd
Clacu03g1532 Clacu-Chr3:28933769 Clacu09g0135 Clacu-Chr9:1277458 6.70E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47448 PF00847 AP2 8.10E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1532 - - - 0.0