Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1538 ATGGCCCTCTCCATTTCTTCCACTGCTCTCTCGACCTTCCCAATCAGAGAAACATTTCACAGAGGACATTTTCCGGGAAAATTCCCAAATTATAAGCTCCGGCGAAATTACTCCGATTTTAAAGCTGCAAAGTCCGGCGTGTCCACCGTCTGTGAACCGCTCCCTCCCGACAGACCGCTCTGGTTCCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGCCTCCCTGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTTCTGACCCAGAGCTACTAAAATGGTTCGCACAAGCGGAGCTAATGCACGCAAGATGGGCAATGCTAGCCGTGGCCGGAATCCTACTGCCGGAATGGTTCGAAAGCTTAGGATTGATACAAAATTTCTCATGGTACGATGCCGGAGCGCGCGAGTATTTTGCAGACCCGACGACATTGCTGGTGGTGCAATTGGCATTGATGGGGTGGGTGGAGGGGCGGCGGTGGGCAGACTTGGTCAATCCGGGCAGCGTGGATGTTGACCTAAAGCTGCCCCACAAAAAGAAGGCAAAGCCAGACATGGGCTACCCGGGCGGGTTTTGGTTTGACCCCATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTCATGGTGCTACGGACTAAAGAGATCAAGAATGGGCGGTTGGCCATGCTGGCGTTTGTCGGATTGTGGTTTCAAGCTATTTATACTGGCCAAGGGCCGCTGGAGAATCTGGCCGCCCACGTGGCTGATCCTGGCCATTGCAACATCTTTTCGGCATTTAGTTCGGGTTCGGGTTGA 798 55.64 MALSISSTALSTFPIRETFHRGHFPGKFPNYKLRRNYSDFKAAKSGVSTVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGAREYFADPTTLLVVQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKPDMGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29002092 29005091 + ClG42_03g0153800.10 Clacu03g1538 246103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1538 265 FunFam Chlorophyll a-b binding protein, chloroplastic 68 253 - -
Clacu03g1538 265 SUPERFAMILY Chlorophyll a-b binding protein 57 260 - -
Clacu03g1538 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 257 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Clacu03g1538 265 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Clacu03g1538 265 Gene3D Chlorophyll a/b binding protein domain 68 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1538 Clacu-Chr3:29002092 Clacu11g1553 Clacu-Chr11:26628799 5.00E-88 dispersed
Clacu03g1538 Clacu-Chr3:29002092 Clacu04g1276 Clacu-Chr4:26821382 3.60E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1538 K08908 - csv:101211430 529.25