Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1543 ATGGCTTTGGATTCGAACAATGGCGGCGAAGTTGGAGTGGATAACTCTCTCCAGTCCATCTGTTACAAGCGGGGCTCCTTGCGGCTGCTCGATCAGAGGAAACTCCCTTTGGAAACTGTCTACTTGGATATCAAGGACGCAACAGATGGATGGCACGCAATAAGGGATATGGTAGTACGCGGGGCACCTGCCATTGCTATTGCAGCAGCCCTTGCTTTGGCAGCAGAAGTGTACAACTCAGACCCTTGTAATGGGACGCCCAACGATGCAGCTTTGTTCATTGCAGAGAAATTGGACTACTTAGTCTCCAGCCGGCCAACTGCAGTTAATCTTGGCGATGCTGCTATAAAACTTAAAGAAATTGTATCTGGTGCCGCTGCAATTTCTTCTGAAGCCAAGAGTGTCTTCCAAGCATATATAGAGGCCGCCGAAGCAATGCTGGAGGATGATGTTGCTTCAAACAAAGCCATTGGGTCCTATGGAGCAACTTATATCCGTGATCAACAAAAATCGTTGGAGAAGTTTTCCGTTCTAACACACTGCAATACGGGCAGTCTAGCAACAGCTGGATATGGTACTGCCCTTGGTGTTATTCGTGCACTTCACTCTGCTGGTGTGTTAGAAAGGGCATACTGTACAGAAACGCGGCCCTTTAATCAAGGATCTCGACTCACAGCCTATGAGTTGGTCCATGAAAAGATACCTTCTACTCTGATAGCTGATTCTGCTGCCGCGGCCTTAATGAAATTTGGAAGAGTGAATGCTGTTGTAGTTGGGGCAGATCGTGTAGCTGCAAATGGTGATACTGCAAATAAGATTGGAACCTATAGTCTTGCATTGTGTGCAATGCATCACAATATTCCATTCTTTGTGGCTGCACCATTGACTTCAATAGACTTATCCCTTTCTTCTGGAGAAGAAATCGTTATAGAGGAAAGGTCTCCCAAAGAGTTGTTGAACTCCCGTGGAGGTCTCGGTGAGCAAGTCGCAGCATCTGGTATCGCTGTCTGGAACCCTGCTTTCGATGTTACTCCTGCTCATCTGATTTCTGGAATCATAACGGAAAAGGGAGTCATCACGAAAGTGGCGGGTTCTGAATCTTTCAACATAAAGGAGTTTGTTCAAAAGACGGAGGGGACTCATGCATAG 1149 46.74 MALDSNNGGEVGVDNSLQSICYKRGSLRLLDQRKLPLETVYLDIKDATDGWHAIRDMVVRGAPAIAIAAALALAAEVYNSDPCNGTPNDAALFIAEKLDYLVSSRPTAVNLGDAAIKLKEIVSGAAAISSEAKSVFQAYIEAAEAMLEDDVASNKAIGSYGATYIRDQQKSLEKFSVLTHCNTGSLATAGYGTALGVIRALHSAGVLERAYCTETRPFNQGSRLTAYELVHEKIPSTLIADSAAAALMKFGRVNAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFFVAAPLTSIDLSLSSGEEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPAHLISGIITEKGVITKVAGSESFNIKEFVQKTEGTHA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29028683 29031889 + ClG42_03g0154300.10 Clacu03g1543 246108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1543 382 Gene3D - 173 376 IPR042529 -
Clacu03g1543 382 Gene3D - 15 172 IPR027363 -
Clacu03g1543 382 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 44 361 IPR011559 GO:0044249(InterPro)
Clacu03g1543 382 SUPERFAMILY NagB/RpiA/CoA transferase-like 16 361 IPR037171 -
Clacu03g1543 382 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 17 370 IPR005251 -
Clacu03g1543 382 FunFam Methylthioribose-1-phosphate isomerase 15 207 - -
Clacu03g1543 382 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 15 375 - GO:0019509(PANTHER)|GO:0046523(PANTHER)
Clacu03g1543 382 Pfam Initiation factor 2 subunit family 59 360 IPR000649 GO:0044237(InterPro)
Clacu03g1543 382 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 18 361 IPR005251 -
Clacu03g1543 382 FunFam Methylthioribose-1-phosphate isomerase 173 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1543 Clacu-Chr3:29028683 Clacu09g0701 Clacu-Chr9:6117616 4.80E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1543 K08963 - csv:101210526 681.019