Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1560 ATGTTTCCCTTCACATCATCTCAGTGGCAGGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGATCTTCTTTTCGGTATTAAAAGAAGTACCTTGGACTCTACTTTCACTTCTAAGTTCTTCCCCCACCATCCTCAACATGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAAATAGACCCAGAACCAGGGAGGTGTAGGAGAACTGATGGGAAAAAGTGGAGATGCTCAAAAGAAGCATATCCAGATTCGAAATACTGTGAGAGACACATGCATAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAACAGCAACAAACGACTTAAACCACCACTCAAATCCAACATTTTCTTCCTTAAAGAACAACTCGTCGTTACTCTCCTATCGGCCCTTCCCCGGTCATCGAATATCTTCAACTCCTAATGGGAATGGCATATCAACCAAAGACACCAATACCCTCTTGCTTCTGGAACCTGGTTCTTACTCGGACAGAAGCCCAGATTACAGAAGTAGGTACACTTATGGGCTAAAGGAGGAAGTGGATGAACATGTTTTCTTCTCACAAGAACCATCTGAAGCTACTGGGAGAGCTGATTACTCTGCTTCGTCCATAGCTAATTCTCTGCAACTGACACCACTAACGATGAGTTGTTCTTCTCTATACCCAAAACAGAGCAATAGCTCCTCTTTGCAGAGTGATCAATCATGTTATCAGCTTCATCAGAGCCTCAAAGACCCTTTGACGCAACAAAAGAGAGATGAATCACAGAAGACCGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGAAAGAGGATCATGGCTTGAGTTCGATGAAAAATCGTCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTACCCATTTTCAGATCCAAAAACCCTTAG 984 43.09 MFPFTSSQWQELEHQALIFKYMVSGIPIPPDLLFGIKRSTLDSTFTSKFFPHHPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTTATNDLNHHSNPTFSSLKNNSSLLSYRPFPGHRISSTPNGNGISTKDTNTLLLLEPGSYSDRSPDYRSRYTYGLKEEVDEHVFFSQEPSEATGRADYSASSIANSLQLTPLTMSCSSLYPKQSNSSSLQSDQSCYQLHQSLKDPLTQQKRDESQKTVHRFFDEWPPKERGSWLEFDEKSSNTSSVSTTRLSISIPTASNDLPIFRSKNP 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29192074 29193215 + ClG42_03g0156000.10 Clacu03g1560 246125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1560 327 Pfam WRC 72 113 IPR014977 -
Clacu03g1560 327 ProSiteProfiles QLQ domain profile. 3 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu03g1560 327 SMART QLQ_2 2 38 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu03g1560 327 ProSiteProfiles WRC domain profile. 71 115 IPR014977 -
Clacu03g1560 327 Pfam QLQ 3 36 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu03g1560 327 PANTHER GROWTH-REGULATING FACTOR 5 3 314 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1560 Clacu-Chr3:29192074 Clacu08g1831 Clacu-Chr8:27567003 1.10E-33 dispersed
Clacu02g0791 Clacu-Chr2:8940980 Clacu03g1560 Clacu-Chr3:29192074 1.30E-48 transposed
Clacu10g1901 Clacu-Chr10:32642736 Clacu03g1560 Clacu-Chr3:29192074 1.20E-30 transposed
Clacu11g0293 Clacu-Chr11:2672614 Clacu03g1560 Clacu-Chr3:29192074 1.30E-76 wgd
Clacu03g1560 Clacu-Chr3:29192074 Clacu07g1409 Clacu-Chr7:28921197 1.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47451 PF08879 WRC 1.10E-20 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1560 - - - 0.0