Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1570 ATGGCCAACTCTGAATTTCTCTGCTCCGCAGCTCTCTCCAAAACCGATTTTGTTCCTCAATCAAAATCCTTTTCCTCTGTTTCGACCTCCGACCATTGGGTCAAGGCTGCCAACGCTCTCAGCCACACCCATTTTGAGGAGGTTTATCGCATGTTGTCGGAGTTTCAAGAGGCTCAAACTGTTGATATCGAAGGCACCACCCTCACCGTCGCTCAGGTGACCGCCGTTGCTCGTCGAAGCGATGTCAAAGTCGTCCTGAATGAAGCTGTGGCACATGATCGTGTGGCCAACAGTGCAAAATGGATTGCTGAGAAAATCTCTAAGGGAATTGATATATATGGAGTTACCACTGGCTTTGGTGCCACCTCCCACCGGCGTACGACCAAACTGGCCGATCTCCAAACAGAACTCATTAGATTCCTCAATGCCGGAGTCATCGGAAAAGACAATCTTCCATCTACCTACTCAAAGGCGGCCATGCTTGTCAGAACAAACACATTGATGCAAGGCTACTCAGGCATTCGTTGGAAAATTCTCGAGGCTGTGGTGAAGCTCATGAATGAGAACTTGATCCCTAAATTGCCTTTGAGAGGGACAATCACAGCTTCTGGAGATCTTGTTCCACTGTCTTATATTGCTGGTGTTATCACTGGAAGGCATAATTCCAAGGTTACCACCATTGAAGGCGATGAGATTACTGCCATAGAAGCTCTCAAGCGAGCTGGAATTGAAGGCCCATTTGAGCTTCAAGCAAAGGAAGGTTTAGCTCTTGTCAATGGAACCGCTGTTGGGTCGGCCGTTGCTGCCACAGTTTGCTATGACGCCAACATTTTGGCTCTTTTAGCTGTCGTCCTCTCTGCTTTGTTCTGTGAAGCCATGCTCGGGAAGCCAGAATTTGCAGACCCATTGACCCATAAGCTCAAGCACCACCCTGGCCAGATTGAATCCGCCGCAGCCATGGAGTTTCTCTTGGACCAAAGCGACTTTATGAAAGAAGCAAAAAGCCGCAATGAAAATGACCCATTGACAAAGCCAAAACAAGATCGTTATGCACTTCGAACATCTCCACAATGGCTCGGACCCCAAATCGAAGTCATTCGAATGGCAACCCATTCGATTGAAAGGGAAATCAACTCTGTGAATGATAACCCATTAATCGACATCGATCGAGATCTAGCTCGACACGGAGGAAACTTTCAAGGAACCCCAATTGGAGTCTCCATGGATAATCTCCGAATCGCCATTGCTGCAATTGGAAAGCTAATGTTTGCCCAATTCTCGGAACTCGTCTGTGATCATTACAACAATGGATTACCATCTAATTTGAGCGGCGGGCCAAACCCTAGCTTGGACTACGGCTTCAAAGGAGCGGAAATCGCCATGGCTGCTTATTGTTCTGAGCTTCAATACTTAGCAAACCCTGTCACAACCCATGTCCAAAGTGCAGAACAACATAATCAAGATGTAAACTCTCTAGGTCTAATCTCAGCCAGAAAATCCGCCGAAGCCATTGAAATTCTCAAGCTCATGTCAGCTACATACATGGTGGCGCTTTGCCAGGCAATCGATTTAAGACAATACGAAGAAAATATGAGGGAAGTAGTGAAAAATGCTCTTCTACAAACCATTAAGAAAACCTTATACGTTGCAGAGTATGGATCTCTTCTCGAATCGCGATTCTGCGAGAAAGACCTATTACAAGTAATCGAGCGCGAGGCGATCTTCTCCTACATCGACGATCCAACCAACACATCCTACACTCTAATCCCAAAATTACTGGAAGTTTTAGTCGAAAAAGCACTGAAAGGAGTTACAACAGGCAAAAGCGAGAATGAAAACGAAACAGGGATTGCCATTTTCAAGCAAATCCCAGGGTTTCTAGAGGAATTAAAAGCGAAATTGGAGAAAGATGTCGAAAATGCGAGAGAGAGATTCGAGAATGGTGATTTCGAAGTGGAAAATAGAATCAAGAAATGCAGCACTTACCCGATCTACCGATTCGTGAGGTGTGAAGTGGGGACTCAACTGTTGAGTGGGGCGAAGAAAGTGAGCCCTGGAGAAGATATTGAGAAAGTGGTGGAAGCCATTGATGAAGGGAAGCTTGGAAATGCTGTGATTCAGTGTTTGAAGAATTAG 2136 45.88 MANSEFLCSAALSKTDFVPQSKSFSSVSTSDHWVKAANALSHTHFEEVYRMLSEFQEAQTVDIEGTTLTVAQVTAVARRSDVKVVLNEAVAHDRVANSAKWIAEKISKGIDIYGVTTGFGATSHRRTTKLADLQTELIRFLNAGVIGKDNLPSTYSKAAMLVRTNTLMQGYSGIRWKILEAVVKLMNENLIPKLPLRGTITASGDLVPLSYIAGVITGRHNSKVTTIEGDEITAIEALKRAGIEGPFELQAKEGLALVNGTAVGSAVAATVCYDANILALLAVVLSALFCEAMLGKPEFADPLTHKLKHHPGQIESAAAMEFLLDQSDFMKEAKSRNENDPLTKPKQDRYALRTSPQWLGPQIEVIRMATHSIEREINSVNDNPLIDIDRDLARHGGNFQGTPIGVSMDNLRIAIAAIGKLMFAQFSELVCDHYNNGLPSNLSGGPNPSLDYGFKGAEIAMAAYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKSAEAIEILKLMSATYMVALCQAIDLRQYEENMREVVKNALLQTIKKTLYVAEYGSLLESRFCEKDLLQVIEREAIFSYIDDPTNTSYTLIPKLLEVLVEKALKGVTTGKSENENETGIAIFKQIPGFLEELKAKLEKDVENARERFENGDFEVENRIKKCSTYPIYRFVRCEVGTQLLSGAKKVSPGEDIEKVVEAIDEGKLGNAVIQCLKN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29283756 29285891 + ClG42_03g0157000.10 Clacu03g1570 246135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1570 711 Pfam Aromatic amino acid lyase 68 534 IPR001106 -
Clacu03g1570 711 Gene3D - 528 654 IPR023144 -
Clacu03g1570 711 SUPERFAMILY L-aspartase-like 32 710 IPR008948 GO:0003824(InterPro)
Clacu03g1570 711 CDD PAL-HAL 66 525 IPR001106 -
Clacu03g1570 711 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Clacu03g1570 711 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu03g1570 711 Gene3D - 21 261 IPR024083 -
Clacu03g1570 711 PANTHER HISTIDINE AMMONIA-LYASE 26 711 IPR001106 GO:0016841(PANTHER)
Clacu03g1570 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1570 Clacu-Chr3:29283756 Clacu04g0960 Clacu-Chr4:23826336 5.90E-237 dispersed
Clacu03g1570 Clacu-Chr3:29283756 Clacu04g0958 Clacu-Chr4:23808415 1.50E-235 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1570 K10775 - csv:101205510 1259.97