Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1576 ATGAGGAAGGGAGGCTTCAGCAACAACCTCAATCTCAAGCTCAGTCTTCCTCAAGAAGAACAATCCATAGCGACGTTTTTAACGCAGAGCGGCACGTTTAAGGATGGTGATCTGCTCGTAAACAGAGATGGGGTTCGTATTGTTTCTCAAAGCGAAGTTGAAGCGCCACCTCCGATTAAGCCTACAGATGATCAGTTGAGTTTAGCGGACATAGACATTATTAAAGTCATTGGAAAAGGAAATGGTGGAACTGTGCAATTAGTTCAGCACAAATGGACTGCTCAGTTTTTTGCATTGAAGGTAATTCAGATGAAAATTGAAGAGTCTCACCGCAAGCAGATTGCACAAGAACTGAAAATCAATCAATCAGCACAGTGCCCTTATATTGTTGTCTGTTACCAATCTTTCTATGATAATGGATCTATATATATCATCCTAGAGTACATGGATGGAGGATCTTTAGCAGATTTTTTGAAAAAGGTTAAAAAGATTCAAGAACCATATCTTGCTGCCCTTTGTAAGCAGGTGCTGAAGGGGTTGTCGTACCTTCACCATGAAAGACACATCATCCATAGGGACTTAAAGCCTTCAAATTTATTAATAAACCATAGAGGGGAAGTCAAGATTACAGACTTTGGTGTCAGTGCGATTATGGCAAGCACATCTGGGGAGGCTAATACTTTTGTTGGCACATATAACTATATGTCTCCAGAGAGAATTGTGGGAGAGAGGTATGACAATAAAAGTGACATTTGGAGCTTGGGCCTGATATTACTCGAGTGTGCAACTGGAAAATTTCCTTATTCTCCACCAGAACAAGATGGAGGATGGGTGAACTTTTATGAGCTTATGGAAGCCATTGTTGAAGGCGAACCTCCTTCTGCTCCGGCTGACCAATTTACTCCCAACTTCTGTTCGTTCATTTCTGCATGTGTGCAAACGGACCCAAAGGATAGACTGTCAGCACGTGAACTTTTGGAACATCCTTTCATCAAGATGATCTCCACTTGCAACTTTCTAAATTTTATCTGTCAGATCGTCTCTGGCTCGTACACGGGAATCTCAATTGTTTGCTGCTTGCAAGGATGGAGAAGGAATCCACCGCAATCTCACTTTCTCATGAATGCTGCTTGTTTTATTTCAGTTTGTCTTAATGAAGAGGTTTCGATCAAAACAGGATGA 1182 41.46 MRKGGFSNNLNLKLSLPQEEQSIATFLTQSGTFKDGDLLVNRDGVRIVSQSEVEAPPPIKPTDDQLSLADIDIIKVIGKGNGGTVQLVQHKWTAQFFALKVIQMKIEESHRKQIAQELKINQSAQCPYIVVCYQSFYDNGSIYIILEYMDGGSLADFLKKVKKIQEPYLAALCKQVLKGLSYLHHERHIIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGEANTFVGTYNYMSPERIVGERYDNKSDIWSLGLILLECATGKFPYSPPEQDGGWVNFYELMEAIVEGEPPSAPADQFTPNFCSFISACVQTDPKDRLSARELLEHPFIKMISTCNFLNFICQIVSGSYTGISIVCCLQGWRRNPPQSHFLMNAACFISVCLNEEVSIKTG 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29339844 29343756 + ClG42_03g0157600.10 Clacu03g1576 246141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1576 393 ProSiteProfiles Protein kinase domain profile. 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1576 393 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524(InterPro)
Clacu03g1576 393 Gene3D Transferase(Phosphotransferase) domain 1 151 345 - -
Clacu03g1576 393 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 17 345 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Clacu03g1576 393 Pfam Protein kinase domain 73 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1576 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1576 393 FunFam Mitogen-activated protein kinase kinase 6 152 346 - -
Clacu03g1576 393 Gene3D Phosphorylase Kinase; domain 1 47 150 - -
Clacu03g1576 393 CDD PKc_MAPKK_plant_like 69 335 - -
Clacu03g1576 393 FunFam Mitogen-activated protein kinase kinase 6 41 150 - -
Clacu03g1576 393 SMART serkin_6 71 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1576 393 SUPERFAMILY Protein kinase-like (PK-like) 56 343 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1576 Clacu-Chr3:29339844 Clacu11g0348 Clacu-Chr11:3146577 1.70E-124 dispersed
Clacu07g0694 Clacu-Chr7:13901304 Clacu03g1576 Clacu-Chr3:29339844 8.50E-39 transposed
Clacu11g1352 Clacu-Chr11:23296682 Clacu03g1576 Clacu-Chr3:29339844 6.00E-39 transposed
Clacu11g0310 Clacu-Chr11:2793512 Clacu03g1576 Clacu-Chr3:29339844 2.10E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73455 PF00069 Pkinase 5.90E-72 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1576 K20603 - csv:101204545 651.358