Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1579 ATGGAGAATCATCAAGAGGTTGAAGCCGAGGAAGAAGATGAAGTGGGACCCTCCGCCGTGGAGGAGGAAGAAATTGGATTTGTGGGTTCGAGCTTGACTTTGGAGAAGGTCGCTGCAGCCAAACAGTACATTGAGAATCATTACAAGGCTCAAAAAAAGCACATTGAAGAACGCAAAGAGAGGCGCTCAGTGCTTGAAAGGAAGTTGGCATCTTCAGATGTCTCAGAAGAAGAACAAATTAATCTATTGAAGGATTTGGAGCGCACGGAGACTCAATACATGCGGCTGAAAAGGCATAAAATTTGTGTCGAGGATTTCAACCTTTTGACAATTATTGGGCGAGGTGCTTTTGGGGAGGTCAGACTTTGTCGGGAGAAGAAAACAGGCAACATATATGCCATGAAGAAGCTGAAGAAATCAGAAATGCTCAGCAGAGGACAGGTTGAACATGTCAGAGCTGAAAGGAATTTACTTGCAGAAGTTGCGAGTCACTGCATTGTGAAACTCTATTATTCCTTCCAAGATGCTGAATACTTGTATCTGATCATGGAGTATCTTCCAGGAGGTGACATGATGACTTTACTGATAAGGGAGGAAACTTTGACGGAAACTGTAGCTAGATTTTACATTGCGCAAAGTGTTTTGGCTATAGAGTCAATTCATAAACATAACTACATCCACAGAGACATAAAACCTGATAACCTTCTACTGGACAAAAGGGGTCATATGAAACTCTCTGATTTTGGTCTTTGCAAGCCTCTTGACTGCACAAATCTGTCTGATATAAATGAAAATGAAGTCCTTGATGATGAAAACTTGCACGATACGGTGGATGTGGATGAGAGCTTTCCAGGTAAAAAAAGTGGGAGACGCTGGAAGAGCCCCCTCGAACAACTTCAGCATTGGCAGATTAACAGAAGGAAACTGGCATTTTCCACGGTTGGCACTCCAGATTATATAGCTCCAGAAGTGTTGCTAAAAAAAGGATACGGTGTGGAATGTGACTGGTGGTCTCTTGGTGCAATAATGTATGAAATGCTTGTTGGTTATCCACCATTTTATTCTGATGATCCAGTAACAACATGCCGAAAGATTGTGCATTGGAAAAATCACTTAAAATTCCCTGATGAGATAAGATTATCACCTGAAGCAAAAGACATGATCAGTAGGCTGCTTTGCGATGCCGAGAATAGGCTTGGTTCTGGAGGTGCAGACCAAATCAAGGCTCATCCTTGGTTCAAAGATACCGAGTGGGACAAACTCTACGACATGGATGCAGCATTTAAGCCCGAGGTCAATGGGGAACTTGATACGCAAAATTTTATGCAATTTGATGAGGTTGATCCACCGCCAACTAGAACCGGATCTGGACCAATAAGGAAGATGTTGTTGACTCCCAAAGATCTCAATTTTGTTGGTTATACATACAAAAATTTTGAAGCTGTCAAAGGGCTACACCATTCATTTGATTTGATGTCAAACACCACCCCCATTCGAACTTCGTCTATTGACTCTACTAAAAGTGACTCGGCATTGAATAACTACTCTACCACCTACTCACCAGATGACAGGGAAACCATATTGGCATCATCAGGGGATGCTTTGTCACAGTAA 1614 42.32 MENHQEVEAEEEDEVGPSAVEEEEIGFVGSSLTLEKVAAAKQYIENHYKAQKKHIEERKERRSVLERKLASSDVSEEEQINLLKDLERTETQYMRLKRHKICVEDFNLLTIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLTETVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKRGHMKLSDFGLCKPLDCTNLSDINENEVLDDENLHDTVDVDESFPGKKSGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEIRLSPEAKDMISRLLCDAENRLGSGGADQIKAHPWFKDTEWDKLYDMDAAFKPEVNGELDTQNFMQFDEVDPPPTRTGSGPIRKMLLTPKDLNFVGYTYKNFEAVKGLHHSFDLMSNTTPIRTSSIDSTKSDSALNNYSTTYSPDDRETILASSGDALSQ 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29358800 29366541 - ClG42_03g0157900.10 Clacu03g1579 246144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1579 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 482 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu03g1579 537 FunFam Non-specific serine/threonine protein kinase 432 442 - -
Clacu03g1579 537 MobiDBLite consensus disorder prediction 498 518 - -
Clacu03g1579 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 FunFam Non-specific serine/threonine protein kinase 312 431 - -
Clacu03g1579 537 Pfam Protein kinase domain 306 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 Pfam Protein kinase domain 107 255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524(InterPro)
Clacu03g1579 537 CDD MobB_NDR_LATS-like 40 101 - -
Clacu03g1579 537 Pfam Protein kinase C terminal domain 432 476 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 FunFam Non-specific serine/threonine protein kinase 67 189 - -
Clacu03g1579 537 SMART pkinase_C_6 414 478 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 414 486 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 MobiDBLite consensus disorder prediction 1 20 - -
Clacu03g1579 537 SMART serkin_6 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 ProSiteProfiles Protein kinase domain profile. 106 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1579 537 FunFam Non-specific serine/threonine protein kinase 190 257 - -
Clacu03g1579 537 CDD STKc_NDR_like 104 477 - -
Clacu03g1579 537 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Clacu03g1579 537 Gene3D Transferase(Phosphotransferase) domain 1 192 430 - -
Clacu03g1579 537 SUPERFAMILY Protein kinase-like (PK-like) 88 462 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1579 Clacu-Chr3:29358800 Clacu08g1755 Clacu-Chr8:26969934 1.10E-166 dispersed
Clacu01g0531 Clacu-Chr1:5258972 Clacu03g1579 Clacu-Chr3:29358800 7.20E-68 transposed
Clacu06g0711 Clacu-Chr6:8302975 Clacu03g1579 Clacu-Chr3:29358800 2.10E-185 transposed
Clacu09g0792 Clacu-Chr9:7112060 Clacu03g1579 Clacu-Chr3:29358800 2.70E-184 transposed
Clacu03g1579 Clacu-Chr3:29358800 Clacu05g1967 Clacu-Chr5:28808871 1.40E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73456 PF00069 Pkinase 4.40E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1579 K08790 - csv:101208238 994.956