Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1595 ATGGAGGAGGTTCTGATTCTTCAGCTGGTGATTCTTTGTCTCTTCATTGCTGTTAATGCTTCCAACCTTGGGGAAATTGCTGGATTCAGCTACTCTCCACCCCCTTCAAGTTTTCAAGCATTTCCTCCGGTTTTAGGAACATCTGGTCCAGTCCAACATGAAAAATCGTTGATAATCAATGGACCAAGCTCAGCGCCTCAGCAAAATGAGTCAACTTTGCAACCACCAGTTATGTTACCAGCAATTGCTCCAGGTCTGTTGCCTGATACGATCAAAGGGTTTATACCATCCGCTTCACCCCATGCTCCGACCGAGTCGCCACCATTTAATAGTATGCCTCAGCCACCTTTACCAGTTCAACCAAATGCACCATTGATTTCACCAAGTGCACCAGAACCAGAAGGTAAAGCACCAGCGAATGAGACTCCTCTGGCAATGGTTTCTCCAGATCCAGCTGTGTCATCCTCAAATTCTCCACATTATCCCCCAGCAAGTTTCCCGCATGAGCAAACAAATATTTCATCGAGTTCTCATCAAATCACTTCACCAAATGTAGCTCCAATCCCCGAGCCAATTTCCCCAGCGAGCAAGTTGCCCAAGAACTCACCAGCTAGTCATCCGGTAGTTTCTGAAAGACCTCCATCCATATTACCAGAGCCCAATATCTCTCCAATGGTGGCTATTTCCCCAAAAGCTGGTGACAGAAATAGATTAGAAGCACCAGCAGCTACACCTTATAATGCACTGCCCAAGTATATGCCACCTGTGTCTCATTCCCCAGAAGAAGCTCCTTCCAGTCACAATGACATGGGACATTCTCATGACGCCCAACAGCCGATCCTTCCACCACAAAAAGCTCCGTTTCATAGAGTAAATCTTTCTCCAACATCTCCTCCTTTGCCCTCAAATTATAAGCATCACAGAAGGAAGAATTATATCATCAGTCACGCACCTGCACCTGCACCATCATATCCAATTTCCTCCCCCACGACAAAAACGCCAGGTCCAGTTATTTCTACAGCACAACATTCGCCAGGCAGACGACATCATGCTCCACCTCCGGAATCAGAACCTTCGCCAATTTCTCCTTCACAATATGCTATGCCACCACCGCTTGTGACGCATGGTTCGCCTTCTCCTTCACCATACCAAAAAGTAGCTGGGCATGCTAGAAGACATTTTTATCCTCCGAAAGCTTCACCGCTGAAACCTTGGGCAAAAAGCCCGAAGATGCCACCAATTCATACGTTGCCTCCTCCACCTCCCAATGAAGATTGTTTAGCTACCCAGTGCACCGAGCCGTATACAAATACTCCCCCAGGATCTCCTTGTGGTTGTGTTTGGCCCATGCAAATTGGACTTCGCCTCAGTGTTTCGCTATATACCTTCTTCCCTCTGGTTTCAGAGCTGGCAGCGGAAATTGCTGTTGGGGTGTTTGTAAAGCAAAGCCAAGTTCGCATCATTGGAGCCAATGCAGCTAACCAGCAACCAGATAAGACTGTTGTCCTTATTGATTTAGTTCCACTTGGCGAAAAATTTGACAATACTACAGCCTTTTTGACTTACCAAAGGTTTTGGCATAAGAAGGTTTCGATCAAAACTTCCTATTTTGGGAACTATGAAGTATTATATGTTCGATATCCAGGTTTACCTCAATCACCTCCTTCTGGAGATTCAGGACTAGATAATGAGCCTTATTTCAGTAATAGTAATGATGCGAGGACAGTAAAACCAATCGGTGTTGATGTGCAGAACAGACAGCACAAAGATAGGCTAAGTGGTGGTATGATTGCCATCGTTGCCCTATCAACTACTGTTGCAGTGGTCTTATGTGTTGCAACTGCTTGGATTTTGCTCTTCAAACGCAATGATGGCCTTTGTCAGCCAAAACCGACTCCACATGTTTCGTTATCCTCCCTCAATAAACCATCAGGTGCTGGTGGATCAGTCATGGCAACCATGCCTAGTTCAGCATCTTTATCCTTTGGATCTAGCATTGCCCCATATTCAGGGTCAGCCAAGACATTCAGCGCCTCTGACATTGAGAGAGCCACCAATGATTTTGATCCTTCAAGAATATTGGGAGAGGGTGGCTTTGGACGTGTTTACAGAGGCGTTCTTGAAGATGGTACCGAAGTAGCAGTCAAAGTTCTCAAGAGAGATGATCATCAGGGTGGTCGAGAATTCTTGGCTGAAGTTGAAATGCTTAGTCGTCTCCACCATAGAAATTTGGTCAAGTTGATTGGAATATGTACCGAGGAACGTAGCCGCGCCCTGGTGTATGAACTTATTCCAAATGGCAGTGTGGAATCTCACTTGCATGGTGTTGATAAGGAAACTGCCCCACTTGATTGGGCTGCCCGGATCAAGATAGCACTTGGCGCTGCTCGGGGTTTATCCTATCTACATGAGGATTCAAGTCCTAGAGTCATACATCGAGACTTCAAATCCAGCAATATCTTGTTAGAAAATGATTTTACACCAAAGGTTTCTGACTTTGGGTTGGCTAGAACTGCAATGGATGAGGAAAGCAGACACATATCGACACGTGTCATGGGAACTTTCGGGTACGTGGCGCCAGAGTATGCAATGACTGGCCATCTACTTGTGAAGAGTGACGTTTATAGCTACGGGGTCGTTCTTCTTGAGCTATTAACTGGCAGGAAACCAGTAGATATGTCGCAACCGCCAGGTGAAGAAAATCTTGTTGCTTGGGCTCGTCCTCTCCTCACAAGCAAAGAAGGCCTAGATGTTATGATTGACAAATCACTAGATTCTAATATTCCTTTCGAAAATATTGCTAAAGTGGCAGCCATTGCTTCAATGTGTGTGCAACCGGAGGTGTCACATCGACCTTTCATGGGCGAGGTTGTTCAAGCATTGAAACTAGTTTGCAACCAATGCAACAAGGCTCGAGAAACAAGCTCACTGGCTGGTTCAAGCCCAGAGAGTTCAACTATCAATACAAATGATGATGAGACATCAAGCTCAAGATACATGCTAGACTCTTTTCATAGCGAATATTTAATACCTAACTCAATTTCGAGTCTAGATGGCATCGATACACATCTCTCAATTTCAGACCTGTTAAATACTTCGATCGGTATCGGAATGCAGGAATCTAGATCGCTGGAAAGATGCTTTAGTTCTGATCCTCCTAGAACCGGAAAAAGCAGAAGGCAGTTCTGGCAAAGAATGAGAAGATACTCCGGAAGTAGCATAAGTGAACATGGAATGCCTACTAGAATATGGTCAGCTTTTCAGTGCTACATGCAACAACTTGTTGGAATTGTGGAGCAAAAGTTCAATCACTTGATTGATGAATTGGGTCATACAAGAACAGTTGTCCTCTAA 3354 45.05 MEEVLILQLVILCLFIAVNASNLGEIAGFSYSPPPSSFQAFPPVLGTSGPVQHEKSLIINGPSSAPQQNESTLQPPVMLPAIAPGLLPDTIKGFIPSASPHAPTESPPFNSMPQPPLPVQPNAPLISPSAPEPEGKAPANETPLAMVSPDPAVSSSNSPHYPPASFPHEQTNISSSSHQITSPNVAPIPEPISPASKLPKNSPASHPVVSERPPSILPEPNISPMVAISPKAGDRNRLEAPAATPYNALPKYMPPVSHSPEEAPSSHNDMGHSHDAQQPILPPQKAPFHRVNLSPTSPPLPSNYKHHRRKNYIISHAPAPAPSYPISSPTTKTPGPVISTAQHSPGRRHHAPPPESEPSPISPSQYAMPPPLVTHGSPSPSPYQKVAGHARRHFYPPKASPLKPWAKSPKMPPIHTLPPPPPNEDCLATQCTEPYTNTPPGSPCGCVWPMQIGLRLSVSLYTFFPLVSELAAEIAVGVFVKQSQVRIIGANAANQQPDKTVVLIDLVPLGEKFDNTTAFLTYQRFWHKKVSIKTSYFGNYEVLYVRYPGLPQSPPSGDSGLDNEPYFSNSNDARTVKPIGVDVQNRQHKDRLSGGMIAIVALSTTVAVVLCVATAWILLFKRNDGLCQPKPTPHVSLSSLNKPSGAGGSVMATMPSSASLSFGSSIAPYSGSAKTFSASDIERATNDFDPSRILGEGGFGRVYRGVLEDGTEVAVKVLKRDDHQGGREFLAEVEMLSRLHHRNLVKLIGICTEERSRALVYELIPNGSVESHLHGVDKETAPLDWAARIKIALGAARGLSYLHEDSSPRVIHRDFKSSNILLENDFTPKVSDFGLARTAMDEESRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSKEGLDVMIDKSLDSNIPFENIAKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNQCNKARETSSLAGSSPESSTINTNDDETSSSRYMLDSFHSEYLIPNSISSLDGIDTHLSISDLLNTSIGIGMQESRSLERCFSSDPPRTGKSRRQFWQRMRRYSGSSISEHGMPTRIWSAFQCYMQQLVGIVEQKFNHLIDELGHTRTVVL 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29591849 29597620 + ClG42_03g0159500.10 Clacu03g1595 246160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1595 1117 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 93 222 - -
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 355 377 - -
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 101 128 - -
Clacu03g1595 1117 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1595 1117 ProSiteProfiles Protein kinase domain profile. 688 964 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 317 387 - -
Clacu03g1595 1117 SUPERFAMILY Protein kinase-like (PK-like) 668 961 IPR011009 -
Clacu03g1595 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 974 994 - -
Clacu03g1595 1117 PANTHER OS01G0750732 PROTEIN 423 1004 IPR050885 -
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 149 186 - -
Clacu03g1595 1117 CDD STKc_IRAK 694 962 - -
Clacu03g1595 1117 FunFam Receptor-like serine/threonine-protein kinase ALE2 764 978 - -
Clacu03g1595 1117 Gene3D Transferase(Phosphotransferase) domain 1 764 982 - -
Clacu03g1595 1117 FunFam receptor-like serine/threonine-protein kinase ALE2 661 763 - -
Clacu03g1595 1117 MobiDBLite consensus disorder prediction 245 305 - -
Clacu03g1595 1117 ProSitePatterns Protein kinases ATP-binding region signature. 694 716 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1595 Clacu-Chr3:29591849 Clacu07g0143 Clacu-Chr7:1810688 1.30E-177 dispersed
Clacu03g1595 Clacu-Chr3:29591849 Clacu07g1728 Clacu-Chr7:31994297 6.30E-62 wgd
Clacu03g1595 Clacu-Chr3:29591849 Clacu09g0068 Clacu-Chr9:676813 2.80E-209 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73457 PF07714 PK_Tyr_Ser-Thr 3.10E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1595 - - - 0.0