Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1608 ATGAGGTTATCGTCCTCTGCAATTCTTGTCCTCTTTCTCTTCTTTCACCTTCTTCTTTGCTTCGCTACTTTCCCTTCCCTTTCCATTTCCCTCTTAACCGTCACTAAATCCGAGTTGGTGCCCGGCGAGATCAATGCTACTGCCGACTCTAACTCCTCGAGATCCGCCAATGATGACCACAGTTTTGCTAACATAATCGATCGGGCTCTCGAGAGGGAATTCACTGAGAATGAGCAGACTGATGAAGTCGCGGATGCTGGCAGCTTCAACAACAGCGTTGCTGAGAAGCAGGCAGTTTTGGAAACTGTTGCTCGAGTTAAGTCAAAGAAGAATGAATCGAAAGAGGAGAAATCATTTCAGTTCCATGATGTCTTCCATTTAGATAATGAGAATCGAGCAGAAGACATGCCCACATTAATTGATCGGAAGGACAATGTTTTTATTATATCCAATCCCAAGTCAAAGTATCCCGTGCTCCAATTGGATTTAAGGTTGATTTCAGATCTAGTTGTTGTTATTGTTTCTGCAACTTGTGGTGGCATTGCTTTCGCATGTGCAGGACAACCGGTCTTTACTGGATACCTGTTGGCTGGATCTCTCATTGGACCCGGAGGTTTAAGCTTTGTCAGCGAAATGGTGCAAGTTGAGACAGTTGCTCAGTTTGGTGTGATCTTCCTTCTTTTTGCATTGGGCCTGGAATTCTCCACTACAAAACTTCGTGTGGTTCGAGCAGTGGCTATTCTTGGAGGATTGCTCCAGATTTTCCTTTTTATGTGCTTGTGTGGAATTACAGCTTCGCTATGTGGTGGTAAATCTTCAGAGGGTGTATTTGTTGGTGCATTCTTGTCTATGTCTTCGACTGCAGTGGTCTTGAAATTTTTAATGGAACGCAATAGCGTCAATGCCATTCATGGTCAGGTGACCATTGGTACTCTTATTCTTCAGGATTGTGCTGTTGGCTTGCTGTTTGCGCTGCTTCCGATTCTTGGTGGTACTTCTGGTGTTCTTCAAGGAGTTCTGTCCATGACTAAGTCGTTGGTGGTCCTGATTACGTTTTTGATTATTTTGACAATATTATCTCGTACATGTGTTCCGAGGTTCCTTAAGCTTATGATTAGCTTGTCATCTCAGACTAATGAGCTCTATCAATTGGCAGCTGTTGCATTCTGCTTACTTGTTGCTTGGTGCAGTGATAAACTGGGCTTAAGCCTTGAATTGGGTTCCTTTGCTGCTGGTGTGATGATATCAACTACTGATCTTGCTCAGCATACACTTGAACAGGTTGAGCCCATTCGCAACTTCTTTGCTGCTCTTTTTCTTGCCAGCATTGGGATGCTAATTCATGTTCATTTCCTATGGAACCACATTGATATTTTACTTGCGGCTGTAATATTGGTCATCATTATAAAAACTGTAGTGGTTACTACTGTTGTCAAGGGATTTGGATACAACAACAAGACTTCACTTCTGGTTGGGATGTCACTTGCACAAATTGGAGAATTTGCTTTTGTCCTTCTAAGCCGTGCCTCTAATCTCCATCTTGTTGAGGGAAAATTGTATATACTGCTGCTTGGGACAACTGCACTTAGCCTGGTGACTACGCCATTGCTTTTCAAGCTTATTCCTGCCGTGGTACGTATTGGAGTGTTGTTGCGGTGGTTTTCACCTGATGGTTTGAGTGAGATTGGATTCAAAGGAGAGGGCTTTCGAATGGATGGTGCCAAGCGCATTACTTTGGTGGTTCAAGACTCTCACGTTTCATGA 1764 43.48 MRLSSSAILVLFLFFHLLLCFATFPSLSISLLTVTKSELVPGEINATADSNSSRSANDDHSFANIIDRALEREFTENEQTDEVADAGSFNNSVAEKQAVLETVARVKSKKNESKEEKSFQFHDVFHLDNENRAEDMPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVFTGYLLAGSLIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAILGGLLQIFLFMCLCGITASLCGGKSSEGVFVGAFLSMSSTAVVLKFLMERNSVNAIHGQVTIGTLILQDCAVGLLFALLPILGGTSGVLQGVLSMTKSLVVLITFLIILTILSRTCVPRFLKLMISLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHIDILLAAVILVIIIKTVVVTTVVKGFGYNNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYILLLGTTALSLVTTPLLFKLIPAVVRIGVLLRWFSPDGLSEIGFKGEGFRMDGAKRITLVVQDSHVS 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29723371 29734020 + ClG42_03g0160800.10 Clacu03g1608 246173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1608 587 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 47 565 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
Clacu03g1608 587 Gene3D - 163 546 IPR038770 -
Clacu03g1608 587 Pfam Sodium/hydrogen exchanger family 173 539 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1608 Clacu-Chr3:29723371 Clacu05g0891 Clacu-Chr5:7761194 5.70E-185 dispersed
Clacu03g1608 Clacu-Chr3:29723371 Clacu08g1856 Clacu-Chr8:27852957 1.50E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1608 K26735 - csv:101208614 1034.63