Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1611 ATGGAGAAGGGTGATCTAGATGTGGCTGGGAAAGTGGTGGTTGTCGCCATTAAAGCCACCTCGAAGGAAGTTTCTAAGGCTGCTCTCGTTTGGGCTTTGACGCATGTTGTTCAGCCTGGAGATCATATTAAGCTCCTTGTGGTTATCCCTTCTCATCAATCAAGTAAATGGATGCGGGGATTTTCTCGACTTACTAGCGACTGTGCGATCGGTCATCTGAGAACTCCTTCAGGAACTTTTTCCGATCGGAAGAATGACATTGTGCATTCATGTTCTCAGATGGTACATCAGCTTCATGGTGCATATGACCCACTGAAGATAAAAGTCAGGATCAAAATTCTTTCTGGTTTGGCTCGGGGTATGGTGGCTACTGAAGCTAAGAAAGCTCAATCGAACTGGGTGATATTGGATAAGAATTTGAAAGATGAAAGGAAAAACTGTTTGGAAGAGCTGCAATGCAATGTTGTTCTTATGAAGAAATCTCAGCCTAAGGTTCTTCGTCTGAATTTGATGGAATCCCCTAAAATAAATACTAGAGAACCTTGGGTACCATCACATGAATTAGATGTTTCTCAGAAGTGTCTTAAAAGCTATTTCGATGAATCGATCATGTTTAGGGCTCCTGATGTGACTCCTGACAGTACTCCTGATGTAGAGTCTCCTCTTACCGTAACTGATATTGGAACATCATCAATATCGAGCTCAGATGTAGGCAGTTCATCCTTGTTCTCTGGGATTTGTGGCAGCTTGAGAAATGAATCCAGAACAGCAGCCGACGGAGGGAGAAATATGTCTGGTTCTGAATATGATTCTGAGAGCGAAAAGCAAACTCCCTCAGTTTCGTATTTCCAGCGTTGTATGGTTGATATCATAAGTTCCAGGCGTAAATTCCAGCAACACGCAATGGAAGAATCACAAAATGCTCATCATAGACCTCCGGCTCCAACACGTCAAGGTCTGGTAAAAAAAATGCCTAATCTTTCTCTAGAACCTAGCACTGATGTGGCGCATTGCAATACCGAAATTAGCTCAAGCAGAAACATAAGGAACACGGTTTCGTTATCCAGAAAAGCACCTCTAGGCCCTCCTCCGCTGTGTTCTATGTGTCAACACAAGGCCCCTGCATTTGGGAATCCTCCTAGATGGTTCACTTATGCTGAACTTGAAGTCGCTACAAGTGGGTTTGCACAAACAAATTTTTTGGCTGAGGGTGGATTTGGTTCTGTGCACCGAGGCGTCTTATCAGATGGACAAGTCGTTGCTGTCAAGCAATATAAACTGGCTAGTACCCAGGGAGATCGAGAGTTTTGTTCAGAAGTTGAGGTCTTAAGTTGTGCCCAACATCGGAACGTCGTGATGCTCATTGGATTTTGTGTGGAGGGTGGAAGAAGGTTACTTGTTTATGAATATATTTGCAATGGATCTCTTGATTCCCATCTATATGGGAGAAATCGTGATCCACTGAAATGGTCTGCACGACAAAAGATTGCAGTCGGGGCTGCTCGAGGATTGAGATACCTTCACGAAGAATGTAGAGTGGGCTGTATTGTGCACCGTGATATCCGCCCAAACAATATCCTCCTTACTCATGATTTCGAGCCACTAGTCGGAGATTTTGGGCTGGCAAGGTGGCAGCCGGATGGCGACCTAGCAGTAGAAACTAGAATCCTTGGGAGATTTGGCTACCTGGCTCCAGAGTATGCACAGAGTGGCCAAATCACAGAGAAAGCTGATACATACTCGTTTGGCGTAGTGCTGCTGGAACTCGTGACTGGACGCAAAGCGATTGATTTAAATCGTCCCAAGGGCCAGCAATGCCTCACTGAATGGGCGCGAAACCTGTTGCGGAAAGATGCGATCTCCGAACTAGTCGATCCATGTTTGAGGAACTGTTATTCAGACAAGGAAGTTCACCGAATGCTGCAATGCGCTTCCTTGTGCATCAAGCGCGATCCATACGTAAGACCGCGCATGTCTCAGGTGCTTCGGGTTTTGGAGGGTGACATCGTTTTGTAA 2016 45.39 MEKGDLDVAGKVVVVAIKATSKEVSKAALVWALTHVVQPGDHIKLLVVIPSHQSSKWMRGFSRLTSDCAIGHLRTPSGTFSDRKNDIVHSCSQMVHQLHGAYDPLKIKVRIKILSGLARGMVATEAKKAQSNWVILDKNLKDERKNCLEELQCNVVLMKKSQPKVLRLNLMESPKINTREPWVPSHELDVSQKCLKSYFDESIMFRAPDVTPDSTPDVESPLTVTDIGTSSISSSDVGSSSLFSGICGSLRNESRTAADGGRNMSGSEYDSESEKQTPSVSYFQRCMVDIISSRRKFQQHAMEESQNAHHRPPAPTRQGLVKKMPNLSLEPSTDVAHCNTEISSSRNIRNTVSLSRKAPLGPPPLCSMCQHKAPAFGNPPRWFTYAELEVATSGFAQTNFLAEGGFGSVHRGVLSDGQVVAVKQYKLASTQGDREFCSEVEVLSCAQHRNVVMLIGFCVEGGRRLLVYEYICNGSLDSHLYGRNRDPLKWSARQKIAVGAARGLRYLHEECRVGCIVHRDIRPNNILLTHDFEPLVGDFGLARWQPDGDLAVETRILGRFGYLAPEYAQSGQITEKADTYSFGVVLLELVTGRKAIDLNRPKGQQCLTEWARNLLRKDAISELVDPCLRNCYSDKEVHRMLQCASLCIKRDPYVRPRMSQVLRVLEGDIVL 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29760836 29764664 - ClG42_03g0161100.10 Clacu03g1611 246176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1611 671 SUPERFAMILY Protein kinase-like (PK-like) 378 663 IPR011009 -
Clacu03g1611 671 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1611 671 PANTHER OS01G0750732 PROTEIN 275 666 IPR050885 -
Clacu03g1611 671 CDD STKc_IRAK 401 667 - -
Clacu03g1611 671 SMART tyrkin_6 395 665 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Clacu03g1611 671 Gene3D Transferase(Phosphotransferase) domain 1 471 669 - -
Clacu03g1611 671 MobiDBLite consensus disorder prediction 253 276 - -
Clacu03g1611 671 ProSitePatterns Tyrosine protein kinases specific active-site signature. 516 528 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1611 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 367 470 - -
Clacu03g1611 671 Pfam Protein tyrosine and serine/threonine kinase 399 664 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1611 671 Gene3D Phosphorylase Kinase; domain 1 366 470 - -
Clacu03g1611 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 471 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1611 Clacu-Chr3:29760836 Clacu05g2110 Clacu-Chr5:29894069 9.50E-144 dispersed
Clacu11g0877 Clacu-Chr11:8722146 Clacu03g1611 Clacu-Chr3:29760836 5.40E-06 dispersed
Clacu03g1611 Clacu-Chr3:29760836 Clacu07g1364 Clacu-Chr7:28461259 5.60E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73458 PF07714 PK_Tyr_Ser-Thr 1.40E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1611 - - - 0.0