Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu03g1629 | ATGATTATCAGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCATTAACGATACCAGAGGAACCTCCTGCAAGCGAGACGCGGTTTGCTTTTCCTCTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTCCAGGAAGCCCTAGCGGCACTTCAGCGATATACGAACGAGTCGGAGATTGAATCTGATTCGGAGTTGTCCGGACGGGAATCGGACGTTCCGGTGGATGCTTATTCTTGCGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACGCGTGGACGGTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCAGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGCCCTGACTTTCGAAAAGGTAGCTGTAAGAAAGGCGATTCGTGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTACTCGTTACAGGACTCAGCCATGTAAGGACGGAACCAACTGTCGAAGAAGAGTCTGTTTCTTCGCCCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGAACTCGCCTGAGTCGTATGATGAATCTCCACTTCGGCAGTCTTTGGATGGATCCTGTGCTAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTTTCACCAACAGCGACTCCGGTGGATTCCCCACCGTTATCGCCCATGACTCGGTCTCTCGGCCGGTCCCTGGGCTCGAGTTCCATCAATGAAATGGTCGCATCTCTCCGGAACTTGCATCTAAGCAAGGTCAAATCCCTGCCATCTTCCTGGAATGTTCAAATTGGATCTCCTGGTTACCCGTCTCGAGTCTGCCATGGATTTTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGGTCATGGAGTTGGACTGCTCGACTTCTCGGAGCATGGATTTGAGGAGGAACCGGCGATGGAGCGAGTTGAGTCGGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAACTGAGCAAGGAAAATTCTCTGGACCTGGCTGATTCAAATCCTTCAGCCTGCACACCAGATGTTGGATGGGTATCAGAGCTGGTGAAGTGA | 1149 | 52.22 | MIISERHRPGPVVHITPLTIPEEPPASETRFAFPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPTRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSLDGSCAKSLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFSEHGFEEEPAMERVESGRELRAKMLEKLSKENSLDLADSNPSACTPDVGWVSELVK | 382 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 29942078 | 29943226 | + | ClG42_03g0162900.10 | Clacu03g1629 | 246194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu03g1629 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Clacu03g1629 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872(InterPro) | |
| Clacu03g1629 | 382 | FunFam | Zinc finger CCCH domain-containing protein 66 | 92 | 160 | - | - | |
| Clacu03g1629 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Clacu03g1629 | 382 | MobiDBLite | consensus disorder prediction | 197 | 221 | - | - | |
| Clacu03g1629 | 382 | MobiDBLite | consensus disorder prediction | 236 | 257 | - | - | |
| Clacu03g1629 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 51 | 382 | IPR045234 | - | |
| Clacu03g1629 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872(InterPro) | |
| Clacu03g1629 | 382 | Gene3D | - | 134 | 198 | - | - | |
| Clacu03g1629 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 159 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g2003 | Clacu-Chr2:33467843 | Clacu03g1629 | Clacu-Chr3:29942078 | 8.20E-50 | dispersed | |
| Clacu03g1629 | Clacu-Chr3:29942078 | Clacu07g0241 | Clacu-Chr7:2814102 | 5.00E-57 | dispersed | |
| Clacu11g0335 | Clacu-Chr11:3007710 | Clacu03g1629 | Clacu-Chr3:29942078 | 3.10E-126 | wgd | |
| Clacu03g1629 | Clacu-Chr3:29942078 | Clacu05g1927 | Clacu-Chr5:28503474 | 9.70E-93 | wgd | |
| Clacu03g1629 | Clacu-Chr3:29942078 | Clacu07g1701 | Clacu-Chr7:31784821 | 5.80E-45 | wgd | |
| Clacu03g1629 | Clacu-Chr3:29942078 | Clacu08g1842 | Clacu-Chr8:27719004 | 4.10E-67 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 47457 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Clacu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu03g1629 | - | - | - | 0.0 |