Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1648 ATGGGGAGAGCAACCAGATGGTTCAAGAACTTGTTTGGGATTAAGAGAGACAAAGAACCCACGAGAGAAATTTCCAACGCCGGCATCAACAAGGAAAAAAAACCCGCTTCGAATTTCACCGGCGACGCCGAACTCTGCAACAATCCGGCGACAATACCGCCGAATTTGTCAGCGGCGGAAGCGGCTTGGCTCAAATCCTTCTACTCGGAAACAGAGAAGGAACAGAGCAAACACGCAATAGCAGTAGCTGCAGCCACTGCCGCTGCAGCCGACGCCGCAGTTGCTGCAGCACAAGCCGCCGTGGCAGTGGTCCGGCTAACCAGCCACGGGAGAGGCACCATGTTCGGCGGCGGCCGGGAAAGATGGGCCTCTGTTAAGATTCAAACTTGCTTCAGAGGATATCTGGCGAGGAAAGCACTGAGAGCTTTGAAAGGATTGGTGAAATTACAAGCGCTTGTGAGAGGATATTTAGTTCGTAAACAAGCAACAGCAACTCTTCATAGTATGCAAGCTTTAATCAGAGCTCAAGCCACCGTTCGATCTCAGAGAACTCGTAGATTCATAAACGACGAAACAAGACTTGAAATCCGAGCCAGAAAATCAATGGAGAGATTTGATGACACAAAAAGCGAACACACAGCTTCGGTACACAGCAGAAGACTCTCTGCTTCATTAGATAACACAGCATTCACAGCAATGGAAGAAAGCCCCAAAATCGTGGAAATCGACACCGGCCGACCAAAATCCTGGTCACGCCGGACGAACACGTCGGCGTCGGAATTAAGCGACGACCTATTTCACCAAACTCTCTCGTCTCCACTCCCTTGCCGGACTCCGTCGCGTTTGCAAATCCCAGATTGCCGGAATTTCCATGACTCTGACTGGTGCGGCGGCGACGACTGGCGTTTAATCTCGACGGCGCAGAGTACTCCACGATTTGTGAACTCTGGCGGTGGATCGAACGGTCCTCCGACGCCGGCGAAGAGTATGTGTGGGGAGAATTTCTTTAAAGGGTATTTGAATTTTCCAAATTACATGGCGAATACTCAATCGTTTAAGGCGAAATTGAGATCTCAGAGTGCACCGAAACAGAGGCCGGAGCTGGGATCGAAGAAAAGGGTTTCGTTGAATGAATTGATGGAATCGAGAAGTAGTCTTAGTGGAGTTAGAATGCAGAGATCTTGTTCTCAAGTTCAAGAAGCCATTAATTTCAAGAACGCAGTGATGAGCAAACTCGATAGGCCATCAGAATTCAACAATTTGCAGAGAAGAATATGA 1278 49.06 MGRATRWFKNLFGIKRDKEPTREISNAGINKEKKPASNFTGDAELCNNPATIPPNLSAAEAAWLKSFYSETEKEQSKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGGGRERWASVKIQTCFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHSMQALIRAQATVRSQRTRRFINDETRLEIRARKSMERFDDTKSEHTASVHSRRLSASLDNTAFTAMEESPKIVEIDTGRPKSWSRRTNTSASELSDDLFHQTLSSPLPCRTPSRLQIPDCRNFHDSDWCGGDDWRLISTAQSTPRFVNSGGGSNGPPTPAKSMCGENFFKGYLNFPNYMANTQSFKAKLRSQSAPKQRPELGSKKRVSLNELMESRSSLSGVRMQRSCSQVQEAINFKNAVMSKLDRPSEFNNLQRRI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30114214 30115696 - ClG42_03g0164800.10 Clacu03g1648 246213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1648 425 ProSiteProfiles IQ motif profile. 144 171 - -
Clacu03g1648 425 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Clacu03g1648 425 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Clacu03g1648 425 Pfam Protein of unknown function (DUF4005) 321 388 IPR025064 -
Clacu03g1648 425 PANTHER IQ-DOMAIN 5-RELATED 6 393 - -
Clacu03g1648 425 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Clacu03g1648 425 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Clacu03g1648 425 ProSiteProfiles IQ motif profile. 120 148 - -
Clacu03g1648 425 MobiDBLite consensus disorder prediction 356 375 - -
Clacu03g1648 425 Gene3D - 118 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1648 Clacu-Chr3:30114214 Clacu09g0028 Clacu-Chr9:358891 7.00E-84 dispersed
Clacu02g1693 Clacu-Chr2:30403268 Clacu03g1648 Clacu-Chr3:30114214 3.30E-09 wgd
Clacu03g1648 Clacu-Chr3:30114214 Clacu07g1334 Clacu-Chr7:28217188 1.10E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1648 - - - 0.0