Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1651 ATGACGAAATCTCTTCCTTCTCTTTCTCTTTCTCTTCTCTGTTTTCTAAAACCCATTTCCTTCTTCTTCTTCCTCCTCCTCCTCTGTTCCCACCATGCCAATTCCCAGCTCTACCAACAAGAACACTCTGTTTTACTCCGATTGAACCAGTTTTGGCAAAACCAAGCCCCAATCAGCCATTGGCTCTCCTCGAATGCTTCGCATTGTACATGGCCGGAGATTCAGTGCACCAACAACTCTGTCACTGCTCTGTTTTTCTCTAACTACAATTTGAACGGAACCTTCCCCCCTTTCCTTTGCGATCTCAACAATCTCACCCACCTTGATCTTCAGCTCAATTTCATCATAGGTGGCTTTCCCACCACTCTTTACAATTGTTCGAACCTTAATTACCTTGACCTCTCTCAGAATTACTTCGCCGGGCCGATTCCCGATGATGTCGACCGCTTGTCTCGCCTCCAGTTTCTTAATCTCGGCGGGAACAGCTTCTCCGGCGAAATTCCGGTATCTATTTCTCGGTTGTCGGAACTCCGGCACCTTTATCTTTTTGTGAATAAATTCAATGGGACTTACCCATCTGAAATTGGTAACTTGTTGAATCTGGAAGAATTGTTGATGGCTTACAATTCAAATCTACAACCGGCTGAATTGCCTTCCAGTTTCGCACAATTGAAGAAGTTGACTTATTTATGGATGACAAAGTCGAACGTAATCGGTGAAATTCCTGAATGGATTGGAAATTTGACCGCCCTCGTGAAATTGGATTTGTCGAAGAACAATTTGACTGGGAAAATCCCCGGCAGTTTGTTTACGTTGAAGAATCTCAGTGTCGTTTATCTGTTTCAGAACAATCTATCAGGAGAAATTCCTCAGCGGATTGATTCTAAAAAAATCACCGAATACGACTTATCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGCGATCTACAGGAACTGACGGCTCTGCTTCTGTTTTCAAATCAGTTATATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTATTAACAGACGTCAGATTGTTCGACAACAATTTAAACGGTACACTGCCGCCAGATTTCGGCCGGAATTTGATCCTCGAAGGTTTTCAAGTGAATTCCAATAAGCTCACCGGAAGCTTGCCGGAGCACTTGTGCGCCGGCGGTAAGCTCATAGGAGTGACTGCTCAAGAGAATAATCTTAGTGGGGAGTTACCAAAATCGCTTGGGAATTGCGATAGCTTGATCATTGTCGATGTTCATAAGAACAATTTTTCAGGGGAAATTCCTGCCGGTCTATGGACGGCTCTGAATTTGACTTATGTAGTCATGAACAACAATTCTTTCACAGGTGATTTTCCTCAGAGAGTCTCGAAGAATCTTGCGAGATTGCAAACTAGCAACAACAAATTTTCAGGGGAAATTCCATCGGATTTATCTTCATTTTGGAATTTGACTGAGTTTGAAGCAAGCAATAATCTGTTGACGGGACAAATTCCTGAAGAACTCACTGCTCTTTCAAAGTTGAACAAGCTTTCGCTTGATGGAAATCAACTCACTGGGGAGCTTCCAAAGAATATCCTTTCATGGAGATTATTGCAGAGTCTTAAACTGAGTCGAAATCGTCTTTCGGGTGAAATACCGGACCAACTTGGCGATTTACCCAACCTTAATGATCTTGATCTCTCGGAGAATCGACTTTCCGGGACGATTCCGACTGAGCTAGGAAAATTGAAACTGAATTTCCTTGACCTCTCTTCAAATTTTCTGTCTGGGACAATCCCATCTGCATTTGAAAATGCAATCTTTGCAAGAAGCTTTTTGAACAATCCAAGTCTTTGTTCGAACAACGCAGTTCTAAATCTCGATGGCTGCAGTTTGAGAACTCAGAATTCGAGAAAGATTTCATCACAGCATCTTGCTCTGATCGTAAGCTTGGGCGTAATAGTATTCATACTCTTTGTAGTTTCTGCTTTGTTCATAATCAAAATCTACAGGAAAACTGGAAATAGAGCAGACGTTGAATGGAAACTGACCTCATTTCAAAGGCTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCGGAGAACAACGTGATTGGGAGCGGTGGATCCGGAAAAGTTTATCGGATCCCGGTGAATAGTTTGGGCGAAACAGTGGCTGTGAAGAAGATATGGAACAACAGAAAGTCAGACCACAAGCTCGAGAAAGAATTCATGGCGGAAGTGAAAATCCTCAGTTCGATTCGACACAACAACATAATCAAACTCCTCTGCTGCGTTTCCTGCGAGACTTCGCGGCTCCTCGTTTACGAGTACATGGAGAAGCAAAGCCTCGACAAATGGCTACACAAGAAGAAGAACTCACCGCCGATAATTACAGGGTCGGACCCTATTTGTGGTGTCGCCCTCGATTGGCCAACAAGATTTCAAATTGCAGTAGGGGCAGCACAAGGCCTCTGTTATATGCACCATGAATGCTCCCCGCCGGTGATTCATAGAGACTTGAAGTCCAGCAATATCTTACTGGATTCAGAATTCAATGCCAAAATAGCAGATTTTGGCTTAGCTAAAATGCTCGTAAAGCAAGGGGAATCGGCTTCAGTCTCCGCCGTTGCCGGCTCTTTTGGATACATGGCTCCAGAGTATGCTCAGACACCAAGAATCAACGAGAAGATCGATGTATTTAGCTTTGGAGTCATTCTTCTGGAGTTGGCAACCGGGAAGGAAGCTCTCAACGGCGATGCAGACTCGTCTCTGGTGGAGTGGGCTTGGGAGTATATTCAAGAAGGCAAGGCAATAGACGATGCGTTGGATAAGGATGTGAAGGAGCCAAATTATGTTGATGAAATGTGTAGTGTTTTCAAACTGGGTGTGATCTGCACTTCCACTTTGCCCACCAACCGCCCCACCATGAACCAGGCATTGCAAATCTTGATCCGCACTCGGACCTCCGCACCCCAAACCCATGGAGATAAAAAATAG 2997 44.21 MTKSLPSLSLSLLCFLKPISFFFFLLLLCSHHANSQLYQQEHSVLLRLNQFWQNQAPISHWLSSNASHCTWPEIQCTNNSVTALFFSNYNLNGTFPPFLCDLNNLTHLDLQLNFIIGGFPTTLYNCSNLNYLDLSQNYFAGPIPDDVDRLSRLQFLNLGGNSFSGEIPVSISRLSELRHLYLFVNKFNGTYPSEIGNLLNLEELLMAYNSNLQPAELPSSFAQLKKLTYLWMTKSNVIGEIPEWIGNLTALVKLDLSKNNLTGKIPGSLFTLKNLSVVYLFQNNLSGEIPQRIDSKKITEYDLSENNLTGRIPAAIGDLQELTALLLFSNQLYGEIPESIGRLPLLTDVRLFDNNLNGTLPPDFGRNLILEGFQVNSNKLTGSLPEHLCAGGKLIGVTAQENNLSGELPKSLGNCDSLIIVDVHKNNFSGEIPAGLWTALNLTYVVMNNNSFTGDFPQRVSKNLARLQTSNNKFSGEIPSDLSSFWNLTEFEASNNLLTGQIPEELTALSKLNKLSLDGNQLTGELPKNILSWRLLQSLKLSRNRLSGEIPDQLGDLPNLNDLDLSENRLSGTIPTELGKLKLNFLDLSSNFLSGTIPSAFENAIFARSFLNNPSLCSNNAVLNLDGCSLRTQNSRKISSQHLALIVSLGVIVFILFVVSALFIIKIYRKTGNRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETVAVKKIWNNRKSDHKLEKEFMAEVKILSSIRHNNIIKLLCCVSCETSRLLVYEYMEKQSLDKWLHKKKNSPPIITGSDPICGVALDWPTRFQIAVGAAQGLCYMHHECSPPVIHRDLKSSNILLDSEFNAKIADFGLAKMLVKQGESASVSAVAGSFGYMAPEYAQTPRINEKIDVFSFGVILLELATGKEALNGDADSSLVEWAWEYIQEGKAIDDALDKDVKEPNYVDEMCSVFKLGVICTSTLPTNRPTMNQALQILIRTRTSAPQTHGDKK 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30157471 30160557 - ClG42_03g0165100.10 Clacu03g1651 246216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1651 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1651 998 Pfam Protein kinase domain 700 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1651 998 CDD STKc_IRAK 704 985 - -
Clacu03g1651 998 Gene3D Ribonuclease Inhibitor 465 533 IPR032675 -
Clacu03g1651 998 Gene3D Ribonuclease Inhibitor 534 617 IPR032675 -
Clacu03g1651 998 Gene3D Phosphorylase Kinase; domain 1 680 777 - -
Clacu03g1651 998 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515(InterPro)
Clacu03g1651 998 Pfam Leucine rich repeat 535 591 IPR001611 GO:0005515(InterPro)
Clacu03g1651 998 SUPERFAMILY L domain-like 58 385 - -
Clacu03g1651 998 ProSitePatterns Protein kinases ATP-binding region signature. 704 728 IPR017441 GO:0005524(InterPro)
Clacu03g1651 998 SMART serkin_6 698 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1651 998 SUPERFAMILY Protein kinase-like (PK-like) 693 983 IPR011009 -
Clacu03g1651 998 Gene3D Transferase(Phosphotransferase) domain 1 778 997 - -
Clacu03g1651 998 FunFam Kinase family with leucine-rich repeat domain-containing protein 778 998 - -
Clacu03g1651 998 FunFam Leucine-rich repeat receptor-like protein kinase TDR 316 630 - -
Clacu03g1651 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 984 IPR050647 -
Clacu03g1651 998 SUPERFAMILY RNI-like 302 651 - -
Clacu03g1651 998 Gene3D Ribonuclease Inhibitor 190 294 IPR032675 -
Clacu03g1651 998 PRINTS Leucine-rich repeat signature 251 264 - -
Clacu03g1651 998 PRINTS Leucine-rich repeat signature 557 570 - -
Clacu03g1651 998 Pfam Leucine Rich Repeat 251 271 IPR001611 GO:0005515(InterPro)
Clacu03g1651 998 Pfam Leucine Rich Repeat 511 530 IPR001611 GO:0005515(InterPro)
Clacu03g1651 998 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 194 294 - -
Clacu03g1651 998 SMART LRR_typ_2 248 272 IPR003591 -
Clacu03g1651 998 SMART LRR_typ_2 319 343 IPR003591 -
Clacu03g1651 998 SMART LRR_typ_2 509 533 IPR003591 -
Clacu03g1651 998 SMART LRR_typ_2 557 581 IPR003591 -
Clacu03g1651 998 SMART LRR_typ_2 150 174 IPR003591 -
Clacu03g1651 998 ProSiteProfiles Protein kinase domain profile. 698 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1651 998 FunFam Receptor-like protein kinase HSL1 isoform A 38 189 - -
Clacu03g1651 998 FunFam Receptor-like protein kinase HSL1 678 777 - -
Clacu03g1651 998 Gene3D Ribonuclease Inhibitor 38 189 IPR032675 -
Clacu03g1651 998 Gene3D Ribonuclease Inhibitor 295 464 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1651 Clacu-Chr3:30157471 Clacu10g0804 Clacu-Chr10:13660984 6.50E-72 dispersed
Clacu08g1364 Clacu-Chr8:23677733 Clacu03g1651 Clacu-Chr3:30157471 1.60E-06 transposed
Clacu03g1651 Clacu-Chr3:30157471 Clacu07g1681 Clacu-Chr7:31561664 7.20E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73460 PF00069 Pkinase 4.20E-49 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1651 - - - 0.0