Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1663 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAGGACGACGAGGAATCCCTCGACGACGAAGACGACGACGAAGAGGAGGAGGAATTGAACGACGATCCTTCTCCTTCCACTTCCTCCGCCGGCGCCGTTCCTGTCCCTTCCGTCTCCGCTACCGTCACCGTCGCCACTCCTGCCGTCTCCGTTGTTCCTCCTCCTTCGATTGTTTCAATCTCCTCTGCCGATCTGATACGCCAGCGCCTCGAGACCGCCACCGCCGAGCCTTTGACCTTGCAGGGGGAGAAGAAGCCCTTGGATGAGTCCAGGAAGTTGTTTCAACGCCTTTGGACCGATGAGGATGAGATCGAGCTTTTGCAGGGGTTTTTGGACTACACGATGCAGCGTGGTACGACTCATCATCATCAGAACGATACGGCGTTGTTTTACGACCAGATCAAGTCGAAATTACAGCTGGATTTTAACAAGAATCAGCTCGTTGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGCAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTCAATTTCAAAAGCCCTCACGATCAGGCTACGTTTGAGATTTCTCGCAAGATCTGGAGCAATACCGGCCGAATTGGAGTCGACGACAACGCTTTAGACGATGACGAACCTGCTGCTCCGACTCCGTATGCTAGCTACATGGACCACAGAAACGAAGAGATGATGGCGAATTGCGCAGAGAAGAAACCGACGCCGACTCCGAAATCGCGGAAGCGCACACGGCCTGGATCGGGAATTAGAATGGACGTTCCGCGTTCGTCTAATGAGAATTTGAGTAAAGAGAAAAACAGTACCTACCACAACAACACCAACAACAACGAAAATGTCAATAACGTAGCGGTAGCAGGATTGATCGAGGAGACGGTGAGGAGCTGCCTGTCGCCATTGTTTAAGGAATTGCTGAATACTTCCATGGGAGGAGGGCTCTGTGGTGGAAGCAGAGGGTTTAGTGGATTGGCTTCGCATCCGATTCCATTGAGCTTCGGTGGTGCTTCCATCAATTTCGGAGGTGGAGGTGAAATGGCGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAAGTTTATTCGAAGAGGTTGGAGTTGGTTCAAGAACAAATTAAGACGGCATTAGAAGACTTGAGGTCCATGGGAGGCTGA 1194 51.26 MDPRNDAVFPDEDLEDDEESLDDEDDDEEEEELNDDPSPSTSSAGAVPVPSVSATVTVATPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLQGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAAPTPYASYMDHRNEEMMANCAEKKPTPTPKSRKRTRPGSGIRMDVPRSSNENLSKEKNSTYHNNTNNNENVNNVAVAGLIEETVRSCLSPLFKELLNTSMGGGLCGGSRGFSGLASHPIPLSFGGASINFGGGGEMADERWRKQQILELEVYSKRLELVQEQIKTALEDLRSMGG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30287894 30289087 + ClG42_03g0166300.10 Clacu03g1663 246228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1663 397 MobiDBLite consensus disorder prediction 267 291 - -
Clacu03g1663 397 MobiDBLite consensus disorder prediction 1 49 - -
Clacu03g1663 397 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 108 204 IPR053932 -
Clacu03g1663 397 Coils Coil 14 34 - -
Clacu03g1663 397 PANTHER BNAANNG10740D PROTEIN-RELATED 15 394 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu03g1663 397 MobiDBLite consensus disorder prediction 9 36 - -
Clacu03g1663 397 Coils Coil 158 178 - -
Clacu03g1663 397 MobiDBLite consensus disorder prediction 242 291 - -
Clacu03g1663 397 Coils Coil 371 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2311 Clacu-Chr1:33998038 Clacu03g1663 Clacu-Chr3:30287894 5.20E-23 dispersed
Clacu02g0172 Clacu-Chr2:1647402 Clacu03g1663 Clacu-Chr3:30287894 2.20E-18 dispersed
Clacu02g1683 Clacu-Chr2:30282281 Clacu03g1663 Clacu-Chr3:30287894 1.30E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu03g1663 . 97 319 GeBP Transcription Factor Family AT3G04930 50.2 3.2e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47460 PF04504 DUF573 1.40E-34 CL0123 Clacu TF