Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1669 ATGTCACAACAACTCTTTGTTAAGATCGAATACACTGCTGCGTTGGCGGGTTGTGATTGGGCCGTAACGGTCAGTGTGGGAACAGTCAGCACAGGAAGCAATCACGAGCCGAATCGGACCAACGAGAATCCGTCGCCTGTAGCCGCGTCGTCCTCACCATGTGTTTCTGATAATCGTCCTGCAACTGCTCCGGGTCAGACTTCCGGCAACTCTCCGTCCAGTCCTTCATCGTCGCCATCGCTGGCAACAACTCCTCCAGGGGGTGGAAGCGTTACTCCGGTTTCGGTGCCTCCCAATCGCTCCGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCGAATTCGGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACACTTTTGAGCTTAGGAAATCATCGGATTGATTCCACTGCCAGGGACCAGGGAGATGCTGCTGAGGTGCTCTCGAGACAATATTGGGAATACAATCTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTCCTTTCTACGGATTCGGCAGTCCAAGGAAAAATTCCATCCCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTCGTGATGGTCAATATGACCGTTGATCCTGCACTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGCACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCTGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGATGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCCATTGGTTCCATTAATATTGGCCTCTCAAGACACCGTGCGTTACTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACTGGTGTTGAAGAAGATGCTGTCAACATTGTAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTCTACCGGCAGACACATTTAGTGCGAAGGACACTACTAACTTTAATCCGTACAACCCCAAAGTAAGCAAAATTCCTTCTCTTCGCCACTCCAATGATGTTGGAATTTCTTCTGCAAAACCAACATCAGCACTTGAGGAAGGCAGCAGTCAGAACTTTGAGGCGGAGGCCATCTCACTGGTGGATGGGAAACTGAGCTATGGAAGGACAGAGTCTGTGCCGTCCAGCTCAGGTACTGGGACTTCTCGATGCAAGGGAGCCCATTTTGGTGAGGGTAATGCTAGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGCTCCGAGGATTCCAAAAATCTTTTTGCGGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCCTAACAAATCCTCTGATAATAAAATTGAGGAGCTCCAGAAACCGAATATTGGGCATCCTCCTGTACCATTATGGAAAAATCGGGTTGCTTTCAATGCAGTTCCCAATAAAAATGAGTACGATTATATGGAGGGTCGTTTTCCAAGAGTTAGTCGCCGACCTAATGATCATAATATGGCATTGTCTTCTTCTTCCAACTCTACTGTCTCTGAAAATGTCAATCCTGGTGGTTCAGGAACATCTACCGACTTGAGTGTATCAATTAGAAGTGCTGAAGTTGGAAGTTCTTCATCTAATATGAACTCACGGCCGACATCTGCAATAATTAAACCTAATATTTTGCCTTTGATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGATGAAAAGGTAGATGCTATTGATGGACGTGATAATTTAATCAGATTTGATAGCCGTAGAAAGTTCACATATGATAGATCTGTTGGGACCAATTTGATATTGAAGGATCCGGGAAGTCCCAGCCTGTTGGTCAATCCAAGTTCGAATAGGTTTGAGCAAGTTTATGACGATGTGGATGTAGGTCAATGTGAAATCCAATGGGAGGACCTCATTATTGGTGAAAGGATTGGACTAGGTTCGTATGGAGAAGTCTACCATGCTGATTGGAATGGCACGGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGGCAGCTGCGTCATCCGAATATTGTTCTCTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGCCCACATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTACTCCAACAATTGTTCACCGAGATCTGAAATCACCGAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTATCAGATTTTGGGTTGTCACGCCTGAAGCACAATACGTTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTCCTTCGGAACGAGCCTTCGAATGAGAAGTGCGACGTTTATAGCTTTGGAATAATTCTATGGGAACTTGCTACATTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGTGCAGTAGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACCGATCCGAACTTGCGCCCCTCATTCTCACAATTAGCCAATATTCTGAAGCCACTGCAGCGGCTCGTCCTGCCACCACATTCAGACCAGCCAAGTTCGTCGGTGCTGCAAGAGATTTCTGTAAATTCTACACCTTAG 2904 45.42 MSQQLFVKIEYTAALAGCDWAVTVSVGTVSTGSNHEPNRTNENPSPVAASSSPCVSDNRPATAPGQTSGNSPSSPSSSPSLATTPPGGGSVTPVSVPPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDQGDAAEVLSRQYWEYNLLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIVKLEDEREFLVDLMAAPGTLLPADTFSAKDTTNFNPYNPKVSKIPSLRHSNDVGISSAKPTSALEEGSSQNFEAEAISLVDGKLSYGRTESVPSSSGTGTSRCKGAHFGEGNARLNVNVVPFGQSSEDSKNLFADLNPFQIKGTGKSFIPNKSSDNKIEELQKPNIGHPPVPLWKNRVAFNAVPNKNEYDYMEGRFPRVSRRPNDHNMALSSSSNSTVSENVNPGGSGTSTDLSVSIRSAEVGSSSSNMNSRPTSAIIKPNILPLIDEQNRKSNGEHSGNTDMEDEKVDAIDGRDNLIRFDSRRKFTYDRSVGTNLILKDPGSPSLLVNPSSNRFEQVYDDVDVGQCEIQWEDLIIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPHCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPTVARIIWECWQTDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISVNSTP 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30410033 30423295 + ClG42_03g0166900.10 Clacu03g1669 246234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1669 967 CDD STKc_MAP3K-like 692 938 - -
Clacu03g1669 967 MobiDBLite consensus disorder prediction 537 565 - -
Clacu03g1669 967 PRINTS Tyrosine kinase catalytic domain signature 799 817 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 PRINTS Tyrosine kinase catalytic domain signature 760 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 PRINTS Tyrosine kinase catalytic domain signature 865 887 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 PRINTS Tyrosine kinase catalytic domain signature 846 856 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 PRINTS Tyrosine kinase catalytic domain signature 909 931 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 Pfam Ethylene-responsive protein kinase Le-CTR1 158 352 - -
Clacu03g1669 967 SUPERFAMILY Protein kinase-like (PK-like) 677 955 IPR011009 -
Clacu03g1669 967 Gene3D Phosphorylase Kinase; domain 1 679 763 - -
Clacu03g1669 967 FunFam Serine/threonine-protein kinase isoform 1 677 764 - -
Clacu03g1669 967 MobiDBLite consensus disorder prediction 29 102 - -
Clacu03g1669 967 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524(InterPro)
Clacu03g1669 967 Gene3D Transferase(Phosphotransferase) domain 1 765 945 - -
Clacu03g1669 967 Pfam Protein tyrosine and serine/threonine kinase 688 937 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 ProSiteProfiles Protein kinase domain profile. 686 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 FunFam PAS domain-containing protein tyrosine kinase family protein 764 951 - -
Clacu03g1669 967 PANTHER SERINE-THREONINE PROTEIN KINASE 85 939 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu03g1669 967 SMART serkin_6 686 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1669 967 MobiDBLite consensus disorder prediction 532 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1669 Clacu-Chr3:30410033 Clacu05g1942 Clacu-Chr5:28609555 1.80E-191 dispersed
Clacu03g1669 Clacu-Chr3:30410033 Clacu04g1031 Clacu-Chr4:24581566 1.10E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73461 PF07714 PK_Tyr_Ser-Thr 8.10E-63 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1669 - - - 0.0