Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu03g1670 | ATGGATTTTAGGGATTCAATTTTGATGGTGATTGTGGTGTGTTTAGTGGGCTGGCTATGGAGACTTTTTAATTGGATTTGGTTGAGGCCAAAGAAACTTGAGAAGTGCCTGAGAGACCAAGGACTCGCCGGAAATTCTTACCGTCTTTTCTCCGGCGACTTGAACGACATCGCCGCCATGATGAAACAAGCCAAATCCAAACCCATGAGCTTCTCACATGATATTGCTCCACGTGTCATCCCATCCATACATCATACCATTCACAAATATGGGAAGAATTCATTCATGTGGCTTGGACCATATCCAAGAGTGCACATTACGGATCCTGAGCAATTGAAAGCTGCCTTTTCACAATATAGTGACTTTCAAAAGCCAACTATCAACCCTCTTGTTGGGTTGCTTTTTGATGGACTTATTAATCATGAAGGAGCACAATGGGCTAAACATAGAAAAATAATCAACCCTGCTTTTCATTTCGAGAAGTTGAAGGACATGGTGCCAACAATGTTTGAGAGTTGCAATTTGATGATTAACAAATGGGAAAGAATGATCTCAAAAGATGGATTTTGTGAATTGGATGTGATGCCTCATTTGCAAAACTTGGCAGCTGATGTCATTTCTCGAACAGCATTTGGAAGCACTTACGAAGAAGGAAAAATTATATTTAATTACCTAAAAGAATTGCTTAATTTGGTCATTGAAGCTAGTAATACCGTTTACATACCGGGATGGAGGTTTCTACCAACAAAGTCAAACAATAGAATGAAAAAGATAAGTAAAGAAATAAAAACTTTGCTCTTGAATGTTGTCAATAAAAGGCAAAGGGCAATGAAGGAAGGTGAAGACGCTATACATAGTGATTTACTAGGCATTCTCTTAGAATCAAATTTCAATGAAATTCAAGAACATGGAAATGTCAATATTGGAATGAGCATAAACGACTTGGTTCAAGAATGTAAGGTTTTTTATTTTGCTGGCCAAGAAACCACAGCGTTGCTACTAGTTTGGACCATGGTTTTGTTAAGCTCATATCCAAAATGGCAAGATCGAGCAAGAGCTGAGGTCTTAGAAGTCTTTGGCAACAACAAACCAGATTTTGATGGTTTAAATCGACTAAAAATTGTTACTATGATTTTGAACGAGGTTCTGAGATTATACCCACCAGCAGGGGTGTTCAGTCGTCGTCTTGTTAAAAAAGAAACAAGACTTGGAAATTTGACTTTTCCACGTGGAGTGTTGTTGAGTTTCCCAATTCTTCTTATTCATCATGATCCAGAGTTATGGGGTGAAGACGCAAACGAATTTAATCCAGAAAGATTTGCTGAGGGAGTGTCAAAAGCAACCAAAAATCAAACCGGATTCTTCCCCTTTGGTTGGGGTCCTCGAATATGCATTGGACAAAATTTTGCCATGATCGAGGCCAAACTTGCATTGTCCATGATTCTACGACATTTCTCATTTGAACTTTCTTCATCCTATACTCATGCTCCTTCATCCATTTTAACTATTCAACCTCAGCATGGAGCTCATATCATCCTACATAAACTTTAA | 1551 | 38.49 | MDFRDSILMVIVVCLVGWLWRLFNWIWLRPKKLEKCLRDQGLAGNSYRLFSGDLNDIAAMMKQAKSKPMSFSHDIAPRVIPSIHHTIHKYGKNSFMWLGPYPRVHITDPEQLKAAFSQYSDFQKPTINPLVGLLFDGLINHEGAQWAKHRKIINPAFHFEKLKDMVPTMFESCNLMINKWERMISKDGFCELDVMPHLQNLAADVISRTAFGSTYEEGKIIFNYLKELLNLVIEASNTVYIPGWRFLPTKSNNRMKKISKEIKTLLLNVVNKRQRAMKEGEDAIHSDLLGILLESNFNEIQEHGNVNIGMSINDLVQECKVFYFAGQETTALLLVWTMVLLSSYPKWQDRARAEVLEVFGNNKPDFDGLNRLKIVTMILNEVLRLYPPAGVFSRRLVKKETRLGNLTFPRGVLLSFPILLIHHDPELWGEDANEFNPERFAEGVSKATKNQTGFFPFGWGPRICIGQNFAMIEAKLALSMILRHFSFELSSSYTHAPSSILTIQPQHGAHIILHKL | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 30423953 | 30431017 | - | ClG42_03g0167000.10 | Clacu03g1670 | 246235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu03g1670 | 516 | Pfam | Cytochrome P450 | 87 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | Gene3D | Cytochrome P450 | 72 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | P450 superfamily signature | 325 | 342 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | P450 superfamily signature | 377 | 388 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 10 | 508 | IPR050665 | GO:0004497(PANTHER) | |
| Clacu03g1670 | 516 | CDD | CYP72 | 80 | 512 | - | - | |
| Clacu03g1670 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu03g1670 | 516 | SUPERFAMILY | Cytochrome P450 | 76 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 201 | 219 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 314 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 334 | 360 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 418 | 442 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | PRINTS | E-class P450 group I signature | 87 | 106 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu03g1670 | 516 | FunFam | Cytochrome P450 734A1 | 27 | 516 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu03g1563 | Clacu-Chr3:29218245 | Clacu03g1670 | Clacu-Chr3:30423953 | 1.10E-144 | dispersed | |
| Clacu03g1670 | Clacu-Chr3:30423953 | Clacu11g1894 | Clacu-Chr11:29993226 | 2.50E-216 | dispersed | |
| Clacu03g1670 | Clacu-Chr3:30423953 | Clacu11g0418 | Clacu-Chr11:3931952 | 2.40E-115 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu03g1670 | - | - | - | 0.0 |