Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1677 ATGGCCGGAATCCCCTCTGAGGGGTTGGGGGATGATTTTTTCGAGCAGATTCTGGCGGTGCCGCCGTCTTACGGCGGCGCAGGTGGCGGTGATATGGTGTCTATGCCTATGGGACTACAACTTGGGTCCGGCGGCGGCGGCGGTGGTGGCGGCGGAGGAATGGGTATGCCTTTGGGATTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGATACAGAGAAGAGCTTGATGGCCACAATAATAATACCACTAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGATGCAGCACATGACAAACTTGTTTCCAACCTTTGGACATTTGCAGACTCAACAACTCCGCCCACCGCCGCCGTTACATCTCCACCAGCCCTTTCACAATCAAACAACTCCCATGACGGTTTCTGCTGTACCACAACCACCTCAAGTTCGACCAAGAGTTCGAGCAAGACGAGGGCAAGCGACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAGGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTTGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCGTCAGTCGAGGGAGAAGGCATTGAGAGTGGCAACAATCAGCATGCATGGGAAAAGTGGTCAAGTGATGGAACAGAGCAACAAGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAGACCATGGGCCCCGACGACATTGCAATTTGAGCAAGAGGGGATCGGTCTACATGAGACAGAAGAAATAG 921 49.62 MAGIPSEGLGDDFFEQILAVPPSYGGAGGGDMVSMPMGLQLGSGGGGGGGGGGMGMPLGLNLEQGFLRQERYREELDGHNNNTTNNASSSSTASSGITERDSSMQHMTNLFPTFGHLQTQQLRPPPPLHLHQPFHNQTTPMTVSAVPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQHAWEKWSSDGTEQQDTPSRSTNLSQARNEHSLDHGPRRHCNLSKRGSVYMRQKK 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30539993 30547737 - ClG42_03g0167700.10 Clacu03g1677 246242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1677 306 Gene3D - 155 212 IPR036638 GO:0046983(InterPro)
Clacu03g1677 306 FunFam Basic helix-loop-helix transcription factor 157 219 - -
Clacu03g1677 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 221 IPR036638 GO:0046983(InterPro)
Clacu03g1677 306 MobiDBLite consensus disorder prediction 79 99 - -
Clacu03g1677 306 MobiDBLite consensus disorder prediction 256 281 - -
Clacu03g1677 306 Pfam Helix-loop-helix DNA-binding domain 167 212 IPR011598 GO:0046983(InterPro)
Clacu03g1677 306 SMART finulus 168 217 IPR011598 GO:0046983(InterPro)
Clacu03g1677 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983(InterPro)
Clacu03g1677 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 222 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu03g1677 306 MobiDBLite consensus disorder prediction 141 166 - -
Clacu03g1677 306 MobiDBLite consensus disorder prediction 256 306 - -
Clacu03g1677 306 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1677 Clacu-Chr3:30539993 Clacu06g1311 Clacu-Chr6:24045031 2.80E-34 dispersed
Clacu09g0742 Clacu-Chr9:6559834 Clacu03g1677 Clacu-Chr3:30539993 2.10E-53 transposed
Clacu03g1677 Clacu-Chr3:30539993 Clacu07g1674 Clacu-Chr7:31457004 1.00E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47462 PF00010 HLH 6.60E-08 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1677 - - - 0.0