Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1718 ATGGATGTTACCAACAATTCAAGAGCACCATCACCACCACGAAAAAATCACTTCCATAACCGCAACAATTCCAAATTCCACCAACATTACCACAACCACAATGCCATTCTCAGCTCAAATTCCTTCCTCATTATCATTGCCTCAATCATCTCCATCACCATTCTCCTTGCCATCTTCTTCCTCATCTTCATGCTTCTCCGCCTCAAATCCGCTCGAAACACTGCCACTGCCGCCGCCTCCACCGCCGCACAATCCACCACATTCATCCCTCACACAACCATCAATTTTGACTCAAGCCCAGAAGTGAAGGGGGGTGGGTGCTTATATGGAGGCAATTCTGGGAGAATTCCTCAGTATAGAATCAGGGGAGTTCAAGTTTTCACTTATAAGGAACTGGAATTGGCTACTGACAATTTTAATGAAGCAAATGTGATTGGAAATGGAAGATTAGGGTTTGTGTACAGAGGAGTTCTTGCAGATGGAGCTGTGGTTGCCATTAAAATGCTTCACAGAGATGGCAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTAGATCTCCTAAGCCGCTTGCACTCTCCTTGTTTGGTGGAATTGCTTGGCTACTGCGCTGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTACATAATCCCAACAGTGAATCTCGGCCATTGGATTGGAAAACTAGAATGAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCAGTTCCATCTGTTATTCATAGAAACTTCAAGTGCACCAATGTTCTACTGGATCAGGATTTCCGAGCCAAGGTGTCGGATTTTGGTTCGGCCAAGATGGGCTCTGACAAGATCAATGGTCAGATATCTACACAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACAGGAAAACTTACAACAAAGTCAGATGTGTACAGCTATGGTGTTGTGCTGCTTGAGCTATTGACCGGTCGAGTGCCAGTTGATATCAAACGGCCGCAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTGACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGGAAGTACTCAAAAAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCTGAAGCCGACTACCGGCCTTTGATGACCGACGTTGTGCAGTCACTGGTTCCTCTAGTTAAGAACCCATCATCGTCGTCTCGATTCTTCAATTGA 1284 45.79 MDVTNNSRAPSPPRKNHFHNRNNSKFHQHYHNHNAILSSNSFLIIIASIISITILLAIFFLIFMLLRLKSARNTATAAASTAAQSTTFIPHTTINFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDNFNEANVIGNGRLGFVYRGVLADGAVVAIKMLHRDGKQRERAFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESRPLDWKTRMRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDFRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSSRFFN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30989784 30992801 - ClG42_03g0171800.10 Clacu03g1718 246283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1718 427 FunFam Receptor-like serine/threonine-protein kinase ALE2 215 426 - -
Clacu03g1718 427 Gene3D Transferase(Phosphotransferase) domain 1 215 424 - -
Clacu03g1718 427 MobiDBLite consensus disorder prediction 1 25 - -
Clacu03g1718 427 ProSiteProfiles Protein kinase domain profile. 139 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g1718 427 Pfam Protein tyrosine and serine/threonine kinase 143 412 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g1718 427 SUPERFAMILY Protein kinase-like (PK-like) 117 412 IPR011009 -
Clacu03g1718 427 CDD STKc_IRAK 145 415 - -
Clacu03g1718 427 FunFam Somatic embryogenesis receptor kinase 1 112 214 - -
Clacu03g1718 427 PANTHER OS01G0750732 PROTEIN 10 417 IPR050885 -
Clacu03g1718 427 Gene3D Phosphorylase Kinase; domain 1 112 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1718 Clacu-Chr3:30989784 Clacu07g0259 Clacu-Chr7:2966479 5.00E-114 dispersed
Clacu03g1714 Clacu-Chr3:30916652 Clacu03g1718 Clacu-Chr3:30989784 2.10E-42 proximal
Clacu03g1718 Clacu-Chr3:30989784 Clacu05g0679 Clacu-Chr5:5690129 1.20E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73466 PF07714 PK_Tyr_Ser-Thr 6.20E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1718 - - - 0.0