Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1724 ATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAGCAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATCACGCACAAGATCAAACCCCTCCTGATCAATAGTAGCTTGCAGCATGGAGCTGAAGGCGAACCACGGAGTCTCCTCCGAAGCAAGCTCACAATGATGCCACCACACACACACGACAGACCGACAGGAGAATTTACACTGAAGATTTGA 819 47.37 MGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAITHKIKPLLINSSLQHGAEGEPRSLLRSKLTMMPPHTHDRPTGEFTLKI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31072476 31074103 + ClG42_03g0172400.10 Clacu03g1724 246289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1724 272 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 182 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Clacu03g1724 272 FunFam Nuclear transcription factor Y subunit gamma 57 170 - -
Clacu03g1724 272 Pfam Core histone H2A/H2B/H3/H4 53 155 IPR007125 GO:0003677(InterPro)
Clacu03g1724 272 Gene3D Histone, subunit A 54 170 IPR009072 GO:0046982(InterPro)
Clacu03g1724 272 SUPERFAMILY Histone-fold 58 164 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1724 Clacu-Chr3:31072476 Clacu09g1425 Clacu-Chr9:19910826 2.20E-62 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47466 PF00808 CBFD_NFYB_HMF 3.10E-18 CL0012 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1724 K08066 - csv:101209664 375.941