Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1724 ATGGGAGCAGTTGGCAGTGGAGGTCAGATAGCATATGGTAGCAACCTGTACCATCCCAACCAAATGACTGTAGGCCCGACTTCCGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACAAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAGCAGCTTCAGCAGCAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCGTTAGCAAGAATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACTGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATCTGAAAGACGAAGTACTCACATCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAAGTTGGGGCACCTGGAATGATCATGGGTAAGCCTGTGATGGACCCAGCTATCACGCACAAGATCAAACCCCTCCTGATCAATAGTAGCTTGCAGCATGGAGCTGAAGGCGAACCACGGAGTCTCCTCCGAAGCAAGCTCACAATGATGCCACCACACACACACGACAGACCGACAGGAGAATTTACACTGAAGATTTGA 819 47.37 MGAVGSGGQIAYGSNLYHPNQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAITHKIKPLLINSSLQHGAEGEPRSLLRSKLTMMPPHTHDRPTGEFTLKI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31072476 31074103 + ClG42_03g0172400.10 Clacu03g1724 246289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1724 272 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 182 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Clacu03g1724 272 FunFam Nuclear transcription factor Y subunit gamma 57 170 - -
Clacu03g1724 272 Pfam Core histone H2A/H2B/H3/H4 53 155 IPR007125 GO:0003677(InterPro)
Clacu03g1724 272 Gene3D Histone, subunit A 54 170 IPR009072 GO:0046982(InterPro)
Clacu03g1724 272 SUPERFAMILY Histone-fold 58 164 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1724 K08066 - - csv:101209664 375.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1724 Clacu-Chr3:31072476 Clacu09g1425 Clacu-Chr9:19910826 2.20E-62 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1891 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.9e-89 323.6
Clacu09g1425 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Clacu03g1724 . 71 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 3.0e-52 202.2
Clacu03g1724 . 5 169 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 4.6e-53 204.9
Clacu09g1425 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Clacu06g1891 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Clacu03g1724 . 12 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.3 9.5e-61 230.3
Clacu09g1425 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Clacu06g1891 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Clacu06g1891 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Clacu06g1891 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.3e-81 297.4
Clacu09g1425 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Clacu03g1724 . 71 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.6 4.8e-48 188.3
Clacu09g1425 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Clacu03g1724 . 43 207 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.1e-50 195.3
Clacu06g1891 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.1e-50 194.9
Clacu08g1162 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.9e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47466 PF00808 CBFD_NFYB_HMF 3.10E-18 CL0012 Clacu TF