Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1741 ATGTCCAAAATCTCAGGGGGTTCTGATGATGGTGGGAGCTTTGTGTCTGATGGTACCCATGGAAGCTCTGAATCCCATCAACACCCTCAGCTTAAAGTTCCCAAGAAGAAAAGAAACTTGCCAGGAACACCAGATCCAGATGCGGATGTTGTATCGTTATCTCCAAAAACTCTTATGGCAACCAATCGATTCGTGTGTGAAATATGCAACAAAGGATTTCAAAGAGACCAAAACTTGCAACTGCACAGACGAGGTCACAACCTACCATGGAAGTTGAAGCAAAGGACAAGCGGGAGCGAGACAAAGAGGAGGGTGTATGTGTGCCCAGAACCGTCATGCGTGCACCACGACCCGGCGAGGGCGCTCGGAGACCTCACCGGAATCAAGAAGCATTTCAGTAGAAAGCATGGGGAGAAAAAGTGGAAATGTGAGAAATGCTCCAAAAGATATGCTGTTCAATCTGACTTGAAAGCTCATTCCAAAACCTGTGGCTCCAAGGAATACAAATGTGACTGTGGCACAATCTTTTCCAGAAGAGATAGCTTTATCACCCACAGAGCATTTTGTGATGCCTTGACAGAAGAAAACAACAAATTAGTATCTCATCAAGTAGCAACAACAATGGCTTCCACCGCCATTAATGCGCCTTCCTTTCAACCTCAACCACTTCAACATCTTCTTTCTCAAACCCCCGTCCTTTCGCCGCCATTAACGCTGCCCCACGACCTTATGCCTATTCCTCCAAAACCCTTAAATCTATCGGCTGGTTCCATGTTTTCATCTTCCATTTCTTCCGCCACCGATGGCCACCACTTTCCCTCCCCCTCTGCCCTCATGTCCGCCACCGCTCTGCTGCAGAAGGCGGCACAGATGGGAGCTGCCGTAAGTAGCCGTGGAAACTCCACTCCTTGTTTGAGTTCGCCCATGGTCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCTTTCTGTGGGATATTGGGTACCAACTGTTTGCAAAAATGTCAAGAAGAAAACATTTTGTCTCAACTACCTTCCAAGGGCAAAGCTGTGGACATGGAGATGATCGACAACATTCCGATGCTGAATGGAGTGCTCGATGATCAGCCGGTCGTGGAGGCGGCGAGGAAGACGATGACATTAGATTTGTTGGGGGCTGAGGGAGGAAAAGGGATGAAATTTCAAGCACAAGAAAATGTGGGGTTTGGAGGACTTGTGGAGAATATGACTTATTTTAGAAACCAAGGAGCCATGGGAAGGCAGATTTGGGAGATTTGA 1284 47.51 MSKISGGSDDGGSFVSDGTHGSSESHQHPQLKVPKKKRNLPGTPDPDADVVSLSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRRVYVCPEPSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDLKAHSKTCGSKEYKCDCGTIFSRRDSFITHRAFCDALTEENNKLVSHQVATTMASTAINAPSFQPQPLQHLLSQTPVLSPPLTLPHDLMPIPPKPLNLSAGSMFSSSISSATDGHHFPSPSALMSATALLQKAAQMGAAVSSRGNSTPCLSSPMVHEKKGFVTTMAPSSFCGILGTNCLQKCQEENILSQLPSKGKAVDMEMIDNIPMLNGVLDDQPVVEAARKTMTLDLLGAEGGKGMKFQAQENVGFGGLVENMTYFRNQGAMGRQIWEI 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31189813 31197054 + ClG42_03g0174100.10 Clacu03g1741 246306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1741 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 395 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu03g1741 427 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
Clacu03g1741 427 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Clacu03g1741 427 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 167 204 - -
Clacu03g1741 427 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 102 136 - -
Clacu03g1741 427 Gene3D Classic Zinc Finger 42 110 - -
Clacu03g1741 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 169 IPR013087 -
Clacu03g1741 427 SMART c2h2final6 106 136 IPR013087 -
Clacu03g1741 427 SMART c2h2final6 64 86 IPR013087 -
Clacu03g1741 427 SMART c2h2final6 141 161 IPR013087 -
Clacu03g1741 427 FunFam protein indeterminate-domain 12-like 43 112 - -
Clacu03g1741 427 Gene3D Classic Zinc Finger 120 203 - -
Clacu03g1741 427 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 140 164 - -
Clacu03g1741 427 MobiDBLite consensus disorder prediction 1 50 - -
Clacu03g1741 427 Pfam Zinc finger, C2H2 type 64 86 IPR013087 -
Clacu03g1741 427 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Clacu03g1741 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1741 Clacu-Chr3:31189813 Clacu09g0608 Clacu-Chr9:5230313 4.50E-91 dispersed
Clacu03g1741 Clacu-Chr3:31189813 Clacu04g0935 Clacu-Chr4:23612608 4.40E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47468 PF00096 zf-C2H2 0.0042 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1741 - - - 0.0