Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1743 ATGGGTTGTGTTGTGAAGTGCGTTTTCATGATTGTTATCTTCATTTCGATGCCTTTTTCATCGCAGAACTCCCACATTTTGATTGCTAACTCATTGTTGAATACAGCAGAGAGCTTCAATGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAGTGGAGGAAATGAACCTTTCATTCTGGAGAGAGTCAGAGCTCTACTTGGACTCAAGAGTTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCACCTTTGCCGTCGCCATTGCCGTCTCCATCACCAGCCCCCATTGCTCCTTCTCCTGTTCCTATGGCAGCTCATCGAGTGCACATTCATGAACATTCCCACCCTCATCAACTCCGCTTGCACAAGAGCCGACCAGTATACAAACCTAAAAGAAAAGAAGATCCAAAAGAAGGAAGAGTCAGAAAAATTCTTGTCGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCATGGAGAAGCATTCTGTTAAGAGTGAAAGAGAAGAGAAGACAGCAAGACCAAAATCTGGCCTTGATCTGTTCGATCTCGGTATGCTTGGAATGGATGTAGAAGAACAGACCCATACTTCTGTAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGAAAGGGACCAAGAGACGTTGGATTCAGAATCTGATAATGTAAGTGTTTCTTCAATCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGATGGAACTCATTCCTCACCTGGGGATAGAGTTACTCCTGTTAAATGTTGTTCGTCTGATGATGAGGAATCATTCCATTCTTGTGGTGACTCCAATTTGTCGAATGCTCGCCTTTCAAATGCTTCCGGATCTTCTTCTGCGAATGTGATAACAAATTCTACTTGTTCTGTGCCAACTGTGAACTTATCAAGTAAATTGGAAATACAATGTGATGAATCTAACAAACTATTAACTTCTTACCATTCGCATCTTACCCTTTCTCCTTGTAGTTCAGAACCCAAAATGCAGATGGTTTCCCAATCTGTAGGTTGCCAAAAGAATGTCCCATCTTTATCTCCACCTCCTCCACCGCCACCGCCACCACCACCGCCTCCGCCAGTCACTGATCGCAGTTCATTTTCCTTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCCTCATCTCCTGCAATGTCAGATTTTTCTTCGTTATCTCAAATACCATGGAATGATTTGCCATCACCTCAAACTGCTACTAAACCTTCACTACCATCATCTGTTATTCCTCCACCCCCTTCTCCACCTCCAAGTTTGAAAACAAACGCTTACTCTTTCAAAACTCCACCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTTGCGGCCAAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTACACCAGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGCTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAAGCAAACATATACTAGAGGCAAAAAGACTTCAGAACCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGTAGCGGGTTGCGTTTGAGACAACTTGAAGCACTGGTTAAGATGGTACCAACTCAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATCGGTGAATTAGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTCGCCTTCCAAAGAATAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAACCATCTACGGAATTCATTTTCCATACTAGAGGAAGCCTGCAAGGAACTAAGATCCAGCAGACTCTTCCTGAAACTACTAGAAGCCGTGCTAAAAACAGGGAATCGAATGAACGTCGGAACAAGCAGAGGAGGCGCTAGAGCATTTAAACTAGACGCCCTCCTAAAACTCTCCGACGTCAAAGGAACCGACGGCAAAACATCTCTACTCCACTTCGTGGTACAAGAAATAATCCGGTCTGAAGGAATCAGAGTATCGGGTAGCATAATGGGAAAAATCAACCAAAAAAACAAATCAAGAACCGTGGAAGAAAGAGAAAACGATTACCGAAGAATGGGGTTAGATCTGGTATCGGGGTTGAGCACGGAACTGCAGAACGTGAAGCGAGCGGCGACGATCGATCTGAAAGTAGTTGGAAGCTCGAGGGGAAATCTGAATGAGGGAATGGGGAAAATGGAGAAACTGGTGGGGAAGGAGTTGAGTGTGGATGAAAGGAGTGGGAATTTCGTGGAAGCCATGAAAGGGTTTGTGGGCTATGTGAAGAAGAGGATGGAGGAAGTGAGGAAGGATGAAGAAAGGGTAATGTCGAGTGTGAGAGAGATTACAGAGTACTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGTTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAATGTCTGTAAGAGCTTCAAGATTGGAAGTTGA 2697 42.94 MGCVVKCVFMIVIFISMPFSSQNSHILIANSLLNTAESFNVKELERVSGEDESGGNEPFILERVRALLGLKSLQLGNQSPSDLSPLPSPLPSPSPAPIAPSPVPMAAHRVHIHEHSHPHQLRLHKSRPVYKPKRKEDPKEGRVRKILVAVLVSAGVTILICSIIAFWVCKKFKSQREESMEKHSVKSEREEKTARPKSGLDLFDLGMLGMDVEEQTHTSVSEKELSVHKEGERDQETLDSESDNVSVSSIKEMMYVHEEDDSKSIQCVSDGTHSSPGDRVTPVKCCSSDDEESFHSCGDSNLSNARLSNASGSSSANVITNSTCSVPTVNLSSKLEIQCDESNKLLTSYHSHLTLSPCSSEPKMQMVSQSVGCQKNVPSLSPPPPPPPPPPPPPPVTDRSSFSFSSPFSTGSTSSSALLRSSSPAMSDFSSLSQIPWNDLPSPQTATKPSLPSSVIPPPPSPPPSLKTNAYSFKTPPPPPSKLPQFMAFGKEGNLRPKLKPLHWDKVRATPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGSGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFAFQRIEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEIIRSEGIRVSGSIMGKINQKNKSRTVEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMGKMEKLVGKELSVDERSGNFVEAMKGFVGYVKKRMEEVRKDEERVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGS 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31205771 31208865 - ClG42_03g0174300.10 Clacu03g1743 246308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1743 898 PANTHER FORMIN-RELATED 65 894 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Clacu03g1743 898 MobiDBLite consensus disorder prediction 399 424 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 436 484 - -
Clacu03g1743 898 Pfam Formin Homology 2 Domain 494 887 IPR015425 -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 452 466 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 216 244 - -
Clacu03g1743 898 Gene3D Formin, FH2 domain 488 895 IPR042201 -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 378 398 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 79 138 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 357 377 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 84 102 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 357 424 - -
Clacu03g1743 898 SUPERFAMILY Formin homology 2 domain (FH2 domain) 502 892 - -
Clacu03g1743 898 ProSiteProfiles Formin homology-2 (FH2) domain profile. 489 898 IPR015425 -
Clacu03g1743 898 Coils Coil 650 670 - -
Clacu03g1743 898 SMART it6_source 489 896 IPR015425 -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 112 129 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 436 451 - -
Clacu03g1743 898 MobiDBLite consensus disorder prediction 216 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1743 Clacu-Chr3:31205771 Clacu11g0239 Clacu-Chr11:2148295 1.80E-105 dispersed
Clacu03g1743 Clacu-Chr3:31205771 Clacu05g1644 Clacu-Chr5:24451291 6.60E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1743 K28090 - csv:101208374 1410.59