Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1753 ATGTTAAGAGTTTCTTTAGCCATTCATCTTTTTACGTTGATCTTTATTCCCGCATTACAAGTTTCCTGCATTGATGTTATCTACCCGAATGAGCAGAATAATGTTAGACAATCCATGATTTCTCAGATTTGTGCAGATATCGAAGATCAAAATTCATGCATTTCGAACATACAACTTGAGATGGGAAGAAGTGTGAACTCAAGTCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTTTCAGAGCTTGCCTGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAAGCATGGCTGAGCGCTGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCATATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCGCGGAATGAAACAATAGAGAAAACCAAAAATTCGGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGCTTGTGAAATCTCATCCACGTAACGTCCATGTTGATGCAGTCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAACTCCAAATTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTATAAAGAAAATATCGACATGAAGCGGAAGAAAACCAACATAATGTTTATTGGAGATGGTATTGGAGAAACAATAGTGACGGGAAATCGCAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAAGCAGTGGCACTCCGAGTTGACTCTGATCAATCAGCCTTCTTTCGGTGCAGCTTCGAAGGCCATCAAGACACGCTCTACGTCCACTCTCTACGCCAATTTTACAGGGAATGCAACATATATGGCACCATAGACTACATCTTTGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACTAGAGTTCCGCTCCCACTCCAGAAGGTCACGATCACGGCACAAGGTCGAAAGTCCCCGCACCAGAGTACGGGGTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAGCCAACGTATCTTGGAAGACCATGGAAGTTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGCGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAATATAAAAACTATGGACCTGGTGCATCCCTTTCGGGTCGGGTCAAATGGCCTGGGTACCACGATATCCGTGACCCTGCCATGGCTAGGTTCTTCACCTCCGAGCACTTCATTGACGGTCGATCATGGTTGCCAAAGACGGGTATAAAGTTCACATTGGGATTGAGTAATTAA 1626 43.79 MLRVSLAIHLFTLIFIPALQVSCIDVIYPNEQNNVRQSMISQICADIEDQNSCISNIQLEMGRSVNSSPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETIEKTKNSEFPDWMMDSEHKLVKSHPRNVHVDAVVALDGSGDFRSITEAVNETPNYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGNRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHDIRDPAMARFFTSEHFIDGRSWLPKTGIKFTLGLSN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31304124 31305885 + ClG42_03g0175300.10 Clacu03g1753 246318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1753 541 SMART PMEI_2 35 190 IPR006501 GO:0004857(InterPro)
Clacu03g1753 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Clacu03g1753 541 PANTHER PECTINESTERASE 10 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu03g1753 541 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857(InterPro)
Clacu03g1753 541 Gene3D - 231 539 IPR012334 -
Clacu03g1753 541 ProSitePatterns Pectinesterase signature 2. 381 390 IPR033131 -
Clacu03g1753 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Clacu03g1753 541 ProSitePatterns Pectinesterase signature 1. 262 281 IPR018040 -
Clacu03g1753 541 SUPERFAMILY Pectin lyase-like 236 538 IPR011050 -
Clacu03g1753 541 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu03g1753 541 FunFam Pectinesterase 231 539 - -
Clacu03g1753 541 CDD PMEI-like_4 67 194 - -
Clacu03g1753 541 NCBIfam pectinesterase inhibitor domain 7 195 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1753 Clacu-Chr3:31304124 Clacu10g0004 Clacu-Chr10:445953 1.10E-131 dispersed
Clacu03g1753 Clacu-Chr3:31304124 Clacu03g1754 Clacu-Chr3:31308022 5.00E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1753 K01051 - csv:101202977 1053.12