Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1789 ATGGACTCGGATGAAATGAGTCAGACAGAAGTATCAAGGATAAAGCCCCCTCTCGTTCCGCTCGCTACTTTGATCGGTCGCGAGTTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCCGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATCAAACTTGATTGCCAGCGTCTTCCTGGGAACCCTTCCACTGCATTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCCGCCATTTTTGCAAAGGAACATTTATTGGGTAATGTCCTAAGTGCAATTCCTCAAGGGGCTAATCGAGAAAAATGGCTTCAGGCCCTTCCCCGAGCACTAGTTGCTGGTTTTGTTAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACTGTTGCATCTGTGGGAGATTCACGGTGCATACTAGACACCCAAGGAGGTGTAGTTTCTCTATTGACAGTTGATCATAGGTTGGAGGAAAATGAAGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGTGAGGTTGGGAGGCTCAACGTTTTTGGCGGGAATGAGGTTGGTCCTCTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGGGATACAGATGTAGGAGAATATATTGTCCCAATACCGCACGTTAAGCAAGTGAAGCTTTCTAATGCTGGTGGAAGGCTAATTATTGCTTCTGATGGTATTTGGGATGCATTATCATCTGAAATGGCTGCAAAGTCGTGTCGAGGTTTACCTGCAGAGCTTGCTGCCAAGCTGGTTGTGAAGGAGGCTTTGCGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTGGTTGTTGATATTATCCCATCCGAGCAACCTATACTATTACCATCAACTCCAAGGAAGAAGCAAAATGTGCTTACCTCATTCTTTGGAAAGAAATATCAAAACTCTTTGGGTAAATCTGCAAACAAACTTTCAGCTGTTGGTGTTGTGGAGGAATTGTTCGAAGAAGGTTCTGCTATGCTTGCTGAAAGGCTAGGCAAAGATTTTCCTTCGGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGTGGATCAACCCCCAAACGAAAATTTGTCGATGAACTCGGGGCCTTTCTTTTCACCGTCGTCAAAGCCATGGGAAGGTCCATTCCTCTGTGCAACTTGTCGAAAAAAGAAAGACGCCATGGAAGGAAAAAGGCCAATAAAACCTACAATAACCGTTTAG 1302 45.16 MDSDEMSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCQRLPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGANREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPSTPRKKQNVLTSFFGKKYQNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDFPSDPNSGIFKCAVCQVDQPPNENLSMNSGPFFSPSSKPWEGPFLCATCRKKKDAMEGKRPIKPTITV 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31627277 31630379 + ClG42_03g0178900.10 Clacu03g1789 246354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1789 433 SMART PP2C_SIG_2 56 302 IPR001932 -
Clacu03g1789 433 Gene3D - 43 307 IPR036457 -
Clacu03g1789 433 ProSiteProfiles PPM-type phosphatase domain profile. 37 302 IPR001932 -
Clacu03g1789 433 Pfam Protein phosphatase 2C 66 285 IPR001932 -
Clacu03g1789 433 CDD PP2Cc 48 302 IPR001932 -
Clacu03g1789 433 FunFam probable protein phosphatase 2C 5 40 307 - -
Clacu03g1789 433 PANTHER PROTEIN PHOSPHATASE 41 301 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu03g1789 433 SUPERFAMILY PP2C-like 48 302 IPR036457 -
Clacu03g1789 433 SMART PP2C_4 28 300 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1789 Clacu-Chr3:31627277 Clacu05g2449 Clacu-Chr5:32651776 8.20E-173 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1789 - - - 0.0