Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1792 ATGAAGCACTTCTTCTTGAAGTTCAATGAACTAACAAAGTCACTAAAAAGATGGAGAAACTCTGAAAATGCTTCTGATGTATGTGGGAGAGAAGCTGCAGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATCTGATCATCCATGGTTCCGGGAGTATGAATATCAATGGTTCGAGCAACTTTGTCTCGAGTTTTTCGAAGAGGGGTGAGAAAGGAATCAACCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGTCAAAAGGATATGATATTTTGTGGGGTTTTTGATGGTCATGGACCATGGGGTCATTTCGTTGCAAAGAAGGTTAGAGAGTCAATGCCAACTACTTTGCTTTGCAATTGGCAAGAAGCACTTGTTCAAACTTCTCTTCACCCACATTTGGAACTCAACTCAGCTAAAACACATCTTCATTTCAATTTGTGGGAGCATTCTTATATAGAAGCTTGTGCTGTGGTGGATCAAGAACTCGAGCGACACCGTAAAATCGACACGTTTCATAGTGGAACAACGGCACTTTCCATCGTTCGACAAGGTGATACAATTGTCATAGCAAACCTTGGTGACTCCCGGGCCGTCTTGGCTACAACTTCTAATGATGGAAACTCGACGCCGTCACCAATTCAGCTTACTGTCGATTTCAAACCGAATCTACCTCAGGAAGCTGAAAGGATAACACAATGCAATGGGAGAGTTTTCTGCTTGCAAGATGAACCAGGGACTCCCCGTCTTTGGTTGCCGAACGGGGAAACGCCGGGGCTGTCAATGTCGAGATCGTTTGGCGATTTTTGCGTTAAGCATTTTGGACTTATTTCTGTGCCTGATGTAACACAAAGAAGTTTAACCAACAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGACGTCGTCACGAATCAAGAAGCTGTGCAAATCGTACATTCCACTGTTGATAGACAAAAATCTGCTCGACGACTGGTTGATTATGCTACTCGTGCATGGAAGCGAAAGAGGCCGAATATTGCAACGGACGACATGTCGGTTATCGTCCTCTACCTACATTCTTCACATTTGCATCAACAACCTTTTTGTGTATTGTAG 1107 43.54 MKHFFLKFNELTKSLKRWRNSENASDVCGREAAEAMAKSAKKKDLIIHGSGSMNINGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKKVRESMPTTLLCNWQEALVQTSLHPHLELNSAKTHLHFNLWEHSYIEACAVVDQELERHRKIDTFHSGTTALSIVRQGDTIVIANLGDSRAVLATTSNDGNSTPSPIQLTVDFKPNLPQEAERITQCNGRVFCLQDEPGTPRLWLPNGETPGLSMSRSFGDFCVKHFGLISVPDVTQRSLTNKDLFVVLATDGIWDVVTNQEAVQIVHSTVDRQKSARRLVDYATRAWKRKRPNIATDDMSVIVLYLHSSHLHQQPFCVL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31650208 31652066 - ClG42_03g0179200.10 Clacu03g1792 246357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1792 368 Gene3D - 50 358 IPR036457 -
Clacu03g1792 368 CDD PP2Cc 60 355 IPR001932 -
Clacu03g1792 368 FunFam Probable protein phosphatase 2C 34 52 357 - -
Clacu03g1792 368 ProSiteProfiles PPM-type phosphatase domain profile. 61 355 IPR001932 -
Clacu03g1792 368 SUPERFAMILY PP2C-like 58 356 IPR036457 -
Clacu03g1792 368 SMART PP2C_4 53 353 IPR001932 -
Clacu03g1792 368 PANTHER PROTEIN PHOSPHATASE 41 353 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu03g1792 368 Pfam Protein phosphatase 2C 85 334 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1792 Clacu-Chr3:31650208 Clacu06g0474 Clacu-Chr6:5517466 4.00E-96 dispersed
Clacu03g1792 Clacu-Chr3:31650208 Clacu02g1564 Clacu-Chr2:29032715 2.90E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1792 - - - 0.0