Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1805 ATGGTTTGTGAAGAAGAAGCTGTAATCCAAAAGGTTTGTGAATTATATGATGAAATCTCAAGCCTTGAAAGCCTAAAACCTTGTAACCATGTCGACACTCTCTTCACTAAATTGGTGGTCACGTGCATGCCACCCACCTCCCCTCATTTCCATATCAATTCACTTTCAAAACCACTTCAACAAATGAGATCAAATCTCATTAGCCTTTGTGGTCAAGCTGAGTCTCTTTTAGAGTCTCATTTTTCTGATCTCTTAGCCAAATTTGATTCCCCTATTCACCATCTCCATGTCTTCCCTTACTTCTCTAATTACCTTAAACTTAGTCTCCTTGAATTCTCCATCCTTCGTCGCCACTGCCCCGTCCTGCCCTCTACCGTCGCCTTCGTCGGCTCTGGCCCTCTTCCTCTTACCTCCATCGTCCTCGCCACTCGCCACCTCACCTCCGCTGTCTTCCACAATTACGATCTCGACCCCCTTGCTAATTCCAAGGCATCTAAGTTGGTGTCGCTCGACCCGGACCTGAAGACGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACGGAGGAGCTGAAACAGTACGAGGTTGTGTTTTTGGCAGCTCTTGTAGGAATGGAGAAGGAAGAGAAATTGAAAGTGATTAAGCATTTGTCAGAGTTCATGTCAGAAGGAGCTTATTTGATGGTGAGAAGTGCTCATGGAGGAAGAGCTTTTCTATATCCTGTGGTTGAAGATTGTGATTTGGTAGGGTTTGAGGTTCTATCTGTGTTTCATCCCACTGATGAGGTTATAAACTCGGTAATAATTGCACGAAAAAAGACGAGTTTTGATAACGATAACAATAATGACAACAGTAATGATAACCACGACAAGAGTTGTTGTTTTTCTGTTAATTCAGATAAACAAGAGGAAGATGAGAATGAGAAGGTGATGATTAGTAGCAGTGGTATTGATCATAAGAATAATAACAATGGGGTTGTGCATAATAACAAATGTTCTGAGATTCAAAGCTTCAATAATCATGGAGGTAAGATTGAGGAATTTGCCATGGAAGCAGCAGCTGAGTAA 1071 42.39 MVCEEEAVIQKVCELYDEISSLESLKPCNHVDTLFTKLVVTCMPPTSPHFHINSLSKPLQQMRSNLISLCGQAESLLESHFSDLLAKFDSPIHHLHVFPYFSNYLKLSLLEFSILRRHCPVLPSTVAFVGSGPLPLTSIVLATRHLTSAVFHNYDLDPLANSKASKLVSLDPDLKTRMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLKVIKHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVIIARKKTSFDNDNNNDNSNDNHDKSCCFSVNSDKQEEDENEKVMISSSGIDHKNNNNGVVHNNKCSEIQSFNNHGGKIEEFAMEAAAE 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31800671 31802400 + ClG42_03g0180500.10 Clacu03g1805 246370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1805 356 Gene3D Vaccinia Virus protein VP39 7 275 IPR029063 -
Clacu03g1805 356 PANTHER NICOTIANAMINE SYNTHASE 3 5 304 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu03g1805 356 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 278 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Clacu03g1805 356 Pfam Nicotianamine synthase protein 5 275 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1536 Clacu-Chr2:28813125 Clacu03g1805 Clacu-Chr3:31800671 1.50E-79 dispersed
Clacu06g1426 Clacu-Chr6:25128417 Clacu03g1805 Clacu-Chr3:31800671 1.60E-76 transposed
Clacu02g1535 Clacu-Chr2:28799063 Clacu03g1805 Clacu-Chr3:31800671 1.70E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1805 K05953 - csv:101218907 570.081