Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1820 ATGGTTCTTAAAAGTTTGTTACTTGCTGAATGTGGTGGCTGGTGGGACTTAAATGGTGTGGTGTGGTGTTCCATGTTGAAGATGATAATGGTGGCTAAAGAAGAGCGAAGTCTCTCTCATTGCCATTTGCGCACGAGGTCCGTGGCATCCCAACGCAGCTTCTCAAGTTTTGGTGAAGTCCTATGTCCAAACTACACTAGGGTGCCTTTGGTTAACAGAAGTGGATTTGACCGGCAATACAAAATGGATTACCGGGGTTACAGTAGTAGACTGGAAACAAACAACCCAAATAAAGGCTATGCTCAGGAGCAGGGATCTCTTGCTGATGACTTTATAGATGACTTTCGCTTGCCCATCAACCATAAACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACTTCATCAAATGTGGGATATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGGAAGGATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAGCGGAAAAAACTTGATGTTGAGGTGGAAGAGACAGAAGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCAATGGAATTTGAAGCTCATCTCAGCTCATATGATCATAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACGTGAAGAGAGAGAGATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGCAGCAGCAGATGCTGGAGCAACAAGAAAGAGCAGCCGAGGCTCCTGTTTCTACTGAACTTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGCCACAAAGAAACCGAAAGTAGCACCTGTAGCTTCAGTTTTCGGGAATGATAGCGATGACGAATAG 1143 42.34 MVLKSLLLAECGGWWDLNGVVWCSMLKMIMVAKEERSLSHCHLRTRSVASQRSFSSFGEVLCPNYTRVPLVNRSGFDRQYKMDYRGYSSRLETNNPNKGYAQEQGSLADDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKQQQMLEQQERAAEAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKNIFGGATKKPKVAPVASVFGNDSDDE 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31961094 31965189 - ClG42_03g0182000.10 Clacu03g1820 246385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1820 380 MobiDBLite consensus disorder prediction 325 355 - -
Clacu03g1820 380 SUPERFAMILY beta-beta-alpha zinc fingers 219 272 IPR036236 -
Clacu03g1820 380 MobiDBLite consensus disorder prediction 271 380 - -
Clacu03g1820 380 ProSitePatterns Zinc finger C2H2 type domain signature. 240 262 IPR013087 -
Clacu03g1820 380 SMART G-patch_5 141 186 IPR000467 GO:0003676(InterPro)
Clacu03g1820 380 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 82 380 - -
Clacu03g1820 380 Coils Coil 301 321 - -
Clacu03g1820 380 ProSiteProfiles G-patch domain profile. 143 188 IPR000467 GO:0003676(InterPro)
Clacu03g1820 380 MobiDBLite consensus disorder prediction 271 301 - -
Clacu03g1820 380 Pfam G-patch domain 144 184 IPR000467 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0806 Clacu-Chr2:9218177 Clacu03g1820 Clacu-Chr3:31961094 1.10E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1820 - - - 0.0