Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1822 ATGACAAGGAAGAAAGTGAAACTTGCTTACATAGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTAAGTGAATTGAGCACTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCTTACGATTCTCAGCCTGAGCTATGGCCTTCCCCCATTGGAGTCCAGCGCGTTCTCTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACGTTTCTAAGGCAGAGGATCGCAAAGGCGAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGAGAGAAAGAGATCACACGGTTGATGTTTCAAAGCCTCACGGCTACAAAAGGGCTGCATGGCCTCAACATGCTTGATTTGAACGATCTAGGTTGGCTTATTGATCAGAATCTTAAAGACATTGGTACACGCATTGACACTCTAAAAAAGCCTCCGACTCAGCTACAGCCTCAGCCCCCACCTCAACCTTCACAAACTCAACCGCTCACGGCGGCGTGGCTCATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAGTGCCTTTTTCCCTTAG 666 47.15 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTATKGLHGLNMLDLNDLGWLIDQNLKDIGTRIDTLKKPPTQLQPQPPPQPSQTQPLTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNPNNAMWSSAFFP 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32000027 32000783 - ClG42_03g0182200.10 Clacu03g1822 246387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1822 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 163 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu03g1822 221 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 MobiDBLite consensus disorder prediction 156 175 - -
Clacu03g1822 221 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Clacu03g1822 221 Coils Coil 87 114 - -
Clacu03g1822 221 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Clacu03g1822 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1048 Clacu-Chr1:14887135 Clacu03g1822 Clacu-Chr3:32000027 3.20E-64 dispersed
Clacu03g1822 Clacu-Chr3:32000027 Clacu10g1801 Clacu-Chr10:31617953 2.50E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47472 PF00319 SRF-TF 6.40E-19 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1822 - - - 0.0