Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g1822 ATGACAAGGAAGAAAGTGAAACTTGCTTACATAGCAAATGACTCTGCAAGAAAGGCAACATTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTAAGTGAATTGAGCACTCTTTGTGGGATTGAGGCTTGTGCAATCGTCTTTAGTCCTTACGATTCTCAGCCTGAGCTATGGCCTTCCCCCATTGGAGTCCAGCGCGTTCTCTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAGATGGTGAACCAAGAGACGTTTCTAAGGCAGAGGATCGCAAAGGCGAACGAGCAATTGAAGAAGATGAGAAAGGACAACCGAGAGAAAGAGATCACACGGTTGATGTTTCAAAGCCTCACGGCTACAAAAGGGCTGCATGGCCTCAACATGCTTGATTTGAACGATCTAGGTTGGCTTATTGATCAGAATCTTAAAGACATTGGTACACGCATTGACACTCTAAAAAAGCCTCCGACTCAGCTACAGCCTCAGCCCCCACCTCAACCTTCACAAACTCAACCGCTCACGGCGGCGTGGCTCATGGAGCTTGTGAGCCCTCAGGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCCTAATAATGCAATGTGGTCCAGTGCCTTTTTCCCTTAG 666 47.15 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTATKGLHGLNMLDLNDLGWLIDQNLKDIGTRIDTLKKPPTQLQPQPPPQPSQTQPLTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNPNNAMWSSAFFP 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32000027 32000783 - ClG42_03g0182200.10 Clacu03g1822 246387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g1822 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 163 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu03g1822 221 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 MobiDBLite consensus disorder prediction 156 175 - -
Clacu03g1822 221 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Clacu03g1822 221 Coils Coil 87 114 - -
Clacu03g1822 221 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Clacu03g1822 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu03g1822 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g1822 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1048 Clacu-Chr1:14887135 Clacu03g1822 Clacu-Chr3:32000027 3.20E-64 dispersed
Clacu03g1822 Clacu-Chr3:32000027 Clacu10g1801 Clacu-Chr10:31617953 2.50E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g25 . . . . . . . . Cmo10g01262 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00024 . . . . . . . . . . . . . . Cma10g01184 . Car10g01041 . . . . . . . . . . Cla03g01710 Cam03g1800 Cec03g1848 Cco03g1853 Clacu03g1822 Cmu03g2370 Cre03g2051 . Csa01g02690 . Cme02g00013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Clacu05g2617 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.4e-88 320.9
Clacu10g1001 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Clacu03g1822 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.7e-55 211.5
Clacu01g1048 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Clacu07g0944 . 30 181 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47472 PF00319 SRF-TF 6.40E-19 No_clan Clacu TF