Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu04g0082 | ATGGCGGATTTCCCAAGCTACATAATTCTCTTCCTCATATGGTTCGTTTCCACCTTCACAATTCGCTTCATCTTTGCCAAAAACAAACATAACTCTCGTCTTCCTCCAAGCCCTTTTGCTCTCCCCATCATTGGCCATCTCCATCTCCTCGGTCCGTTGCCCCACAAAGCTTTCCACAAGCTCTCGACCCGCCATGGACCCTTAATGCACCTCCATTTAGGATCGGTCCCTTGCGTCGTAGTTTCGTCACCCGAAACAGCAAAACAAGTCCTCAAAACATTTGAATCTTCCTTCTCCAATAGACCCCATTTGTCAGCAGTTGACTATCTAACCTATGGCTCAGCTGATTTCTCCTTTGCTCCCTATGGACCTTATTGGAAGTTCATGAAGAAACTTTGTATGTCAGAGCTCCTCGGCGGCAGGACGCTCGACAGCCTTCGCCCCATGAGAGAGGACGAGATGCGGTGGTTTCTACGGTCATTGCAGTTGAAGGCCGCGGAGGGGAAAGAAGTTGATGTTGGAGGAGAGTTAATGAGGCTGAGCAACAATGTGATATCCAGAATGACATTGGGGAAAAGATGTGCTGAGGAAGAAGAAGAGGCTGAGGGGATAAGGAAATTAGTGAAGGATGTAGCTGAACTTTCAGGGACTTTTAATGTTTCAGATTATATTTGGTTTTGCAAGAATTTGGACTTGCAAGGGCTTGGGAAGAGGCTTAAGGAAGTTCATGAGAGGTTTGATGAGATGATGGAGAGAATGATAAAAGAACATGAAGAGAATAGTGGTGATGGGAAAGTGAAGGATTTGCTTGATATTTTGCTTCTTAAGTTTGGAGATCAAAACTCAGAGGTCAAGTTGACTAGAGAGAACATTAAGGCCTTTGTTATGGATATATTTACAGCAGGAACAGACGCATCAGCAATAACAATAGAATGGGCATTAGCAGAGCTAATAAACCATCCAAACATAATGGAGAAAGCAAGAGAAGAAGTTCACAGAGTTGTAGGAAAGAATAGAGTGATCGAAGAATCAGACATTGTCAATCTTCCTTATCTCCGAGCAATAGTAAAAGAGACCTTAAGGCTTCACTCAAGCCCATTGGTAGTAAGGGAATCAACTGAAAGTTGCACAATAAATGGTTATGAGATTCCACCAAAAACTCAAGTTTATGTGAATGTTTGGGCCATTGGGAGAGACCCAAATCACTGGGAAAACCCTCTTGAGTTTGAGCCGGAAAGGTTTATGGACAAAGAAGGGAGTGTGAATAGTGGTGATTTGAGAGGGCAAAATTTTCAGTTGTTGCCATTTGGGAGTGGGAGAAGAAGCTGTCCTGGAATAACTCTTGCTTTGCTAATGGTTCAGACAACTTTGGGTTGTATGATTCAATGCTTTGATTGGAAGGTTACTGGAGGAAATGGGAAAGTTGATATGGAAGAAGGGCCTGGCCTTACACTTCCTAGGGCACACCCTTTAGTTTGTGTTCCAAATCCTTGTCTAACTCCATTTCCACCACTTTGA | 1518 | 43.54 | MADFPSYIILFLIWFVSTFTIRFIFAKNKHNSRLPPSPFALPIIGHLHLLGPLPHKAFHKLSTRHGPLMHLHLGSVPCVVVSSPETAKQVLKTFESSFSNRPHLSAVDYLTYGSADFSFAPYGPYWKFMKKLCMSELLGGRTLDSLRPMREDEMRWFLRSLQLKAAEGKEVDVGGELMRLSNNVISRMTLGKRCAEEEEEAEGIRKLVKDVAELSGTFNVSDYIWFCKNLDLQGLGKRLKEVHERFDEMMERMIKEHEENSGDGKVKDLLDILLLKFGDQNSEVKLTRENIKAFVMDIFTAGTDASAITIEWALAELINHPNIMEKAREEVHRVVGKNRVIEESDIVNLPYLRAIVKETLRLHSSPLVVRESTESCTINGYEIPPKTQVYVNVWAIGRDPNHWENPLEFEPERFMDKEGSVNSGDLRGQNFQLLPFGSGRRSCPGITLALLMVQTTLGCMIQCFDWKVTGGNGKVDMEEGPGLTLPRAHPLVCVPNPCLTPFPPL | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1755147 | 1757451 | - | ClG42_04g0008200.10 | Clacu04g0082 | 246479 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu04g0082 | 505 | SUPERFAMILY | Cytochrome P450 | 28 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PANTHER | CYTOCHROME P450 93A3-LIKE | 8 | 496 | - | - | |
| Clacu04g0082 | 505 | Gene3D | Cytochrome P450 | 25 | 493 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | P450 superfamily signature | 434 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | P450 superfamily signature | 354 | 365 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | P450 superfamily signature | 443 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | Pfam | Cytochrome P450 | 35 | 493 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | CDD | CYP93 | 66 | 495 | - | - | |
| Clacu04g0082 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 436 | 445 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 290 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 392 | 416 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 310 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 443 | 466 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | PRINTS | E-class P450 group I signature | 433 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Clacu04g0082 | 505 | FunFam | Cytochrome P450 family protein | 26 | 493 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu04g0082 | Clacu-Chr4:1755147 | Clacu10g1716 | Clacu-Chr10:30673031 | 1.90E-165 | dispersed | |
| Clacu04g0082 | Clacu-Chr4:1755147 | Clacu09g0434 | Clacu-Chr9:3795835 | 2.80E-116 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu04g0082 | K24188 | - | csv:101213143 | 893.649 |