Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0129 ATGGGAGACCCATATTCAAACTCATCAGCAAGTGTTCTAAAATTCAACTCCCTTCACCACCATTTTTCCCCATCACAACCTTCAAATTCTACCCCACACCTCAACATGTCTCACAATTGCTTCTCTTGCCCCTACTCGAACCCGCATCCGCCTCTGCCTCCATCTCCACCGCTCCGTGAGGCTCTGCCGCTTCTCGGGCTGATGTCTCCGCCCGAGCAGCGGCAGGAGCAAGAAGAAGAAGACGATGGCGGAGGCGGGAGAGATGAGGAGGAATCGGTGACGGTGGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCAGAGATAGCATCTTTGATGTGTGGTTCTTCATCTGAGATTGATCATGTTGGTGATGGAGATCATAGCAATAGTAATAATAATAATCAAGATCATGATTTAGGGCAGTCCACCAAAACCCTAATAAAGGGGCAGTATTGGATCCCTACTCCTTCTCAAATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCAGAGTCCCTCCGAGGCACGCAGCCAACGGGAATGCTACGACTTCCATGTTACTGCTGTGCACCGGGGTGTCGCAACAACATAGACCACCCTCGAGCCAAACCCTTGAAGGACTTCAGAACCCTGCAAACGCATTACAAGCGCAAGCATGGCCTGAAGCCCTTCATGTGTCGAAAGTGCGGTAAGGCGTTTGCCGTGCGCGGGGACTGGCGGACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATTTGTGGCTCGGATTTCAAACACAAGCGCTCTTTGAAGGACCATGTCAAGGCCTTCGGTAACGACCACGCCGCCTATGGTGGGGGCGGGATCGATGGGTTCGGAGACGAGGAAGATGAGCCTGCTTCAGAAGTCGAGCAGGATAATGATGAGTGA 993 51.76 MGDPYSNSSASVLKFNSLHHHFSPSQPSNSTPHLNMSHNCFSCPYSNPHPPLPPSPPLREALPLLGLMSPPEQRQEQEEEDDGGGGRDEEESVTVALHIGLPSPSAAEIASLMCGSSSEIDHVGDGDHSNSNNNNQDHDLGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3108048 3110952 - ClG42_04g0012900.10 Clacu04g0129 246526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0129 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Clacu04g0129 330 SUPERFAMILY beta-beta-alpha zinc fingers 163 189 IPR036236 -
Clacu04g0129 330 MobiDBLite consensus disorder prediction 312 330 - -
Clacu04g0129 330 MobiDBLite consensus disorder prediction 70 91 - -
Clacu04g0129 330 FunFam zinc finger protein WIP2-like 166 189 - -
Clacu04g0129 330 Gene3D Classic Zinc Finger 214 304 - -
Clacu04g0129 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 271 IPR013087 -
Clacu04g0129 330 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Clacu04g0129 330 MobiDBLite consensus disorder prediction 308 330 - -
Clacu04g0129 330 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 250 274 - -
Clacu04g0129 330 PANTHER ZINC FINGER PROTEIN WIP2 31 328 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Clacu04g0129 330 FunFam Zinc finger protein WIP2 220 302 - -
Clacu04g0129 330 SUPERFAMILY beta-beta-alpha zinc fingers 236 271 IPR036236 -
Clacu04g0129 330 Gene3D Classic Zinc Finger 166 189 - -
Clacu04g0129 330 MobiDBLite consensus disorder prediction 127 141 - -
Clacu04g0129 330 SMART c2h2final6 167 189 IPR013087 -
Clacu04g0129 330 SMART c2h2final6 251 271 IPR013087 -
Clacu04g0129 330 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0129 Clacu-Chr4:3108048 Clacu10g1710 Clacu-Chr10:30592900 2.90E-101 dispersed
Clacu04g0129 Clacu-Chr4:3108048 Clacu02g2378 Clacu-Chr2:36800980 8.60E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47478 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0129 - - - 0.0