Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0147 ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATATTTCTACATCCTCAAAAGGCCCACTTGGTTTGAGTGGGAAAATTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCAAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCATGAACTTGGAAACATTAGGTGCTTGGCACTGGAAAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAAATACCAGAATTTGGGCTGTCAAGATATTTTTCCCTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATACCGTCCTTACAACTGCCCATATGCTGGATCAGAGTGTTCGGTCACGGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGATGGGTGTACTTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAAGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGGCGTAAACTGATATGGCAAGGAATCCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAGGACGGTCTCATTATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAAAGGCAAGAGCTGAAGCTGAGAATTACAGGTCGAATATGGAAAGAAGAATGA 924 45.13 MAPGSSTCKEVVDSHPSVSGHDIAMSKSENISTSSKGPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCKYQNLGCQDIFPYYSKLKHEQHCRYRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3637627 3640756 + ClG42_04g0014700.10 Clacu04g0147 246544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0147 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Clacu04g0147 307 MobiDBLite consensus disorder prediction 21 36 - -
Clacu04g0147 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Clacu04g0147 307 Pfam Sina, zinc finger 108 183 - -
Clacu04g0147 307 SUPERFAMILY TRAF domain-like 112 304 - -
Clacu04g0147 307 MobiDBLite consensus disorder prediction 1 36 - -
Clacu04g0147 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Clacu04g0147 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Clacu04g0147 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
Clacu04g0147 307 SUPERFAMILY RING/U-box 53 100 - -
Clacu04g0147 307 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Clacu04g0147 307 CDD Sina 173 301 - -
Clacu04g0147 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515(InterPro)
Clacu04g0147 307 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Clacu04g0147 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 166 IPR013083 -
Clacu04g0147 307 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Clacu04g0147 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 302 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Clacu04g0147 307 CDD RING-HC_SIAHs 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2427 Clacu-Chr2:37250556 Clacu04g0147 Clacu-Chr4:3637627 5.60E-134 dispersed
Clacu04g0147 Clacu-Chr4:3637627 Clacu05g1054 Clacu-Chr5:9435367 8.50E-132 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0147 K04506 - rcu:8260973 582.408