Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0155 ATGGGAGACGGCAATAACACCAATAGAGGCCTTGTCTCCGCCAACGCCGCAAACCGGAACACCACCAACAACAGCAACAACGGCAGCCACCACAAGAAGCCCGAGTGGCTGCAGCAGTACGATCTAATTGGGAAGATCGGAGAAGGAACCTATGGCCTCGTGTTCCTTGCTAAAATCAAACCCCCTTCGCCAAGTCGCGGCAAGTCAATTGCCATCAAAAAATTTAAGCAATCTAAGGACGGTGATGGCGTCTCCCCAACTGCCATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAAAATGTTGTCAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATTTAGCTTTTGATTATGCTGAACACGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTTCTCAATGGTTTGAACTATCTCCACAGCAATTGGATCATTCATCGCGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAAGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCTGAAAATGGAGTTGTTGTCACCATTTGGTATCGAGCACCTGAACTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGATATGTGGGCTGTTGGATGTATTTTTGCCGAGCTTTTGACGTTGAAGCCATTATTTCAAGGTCAAGAAGTCAAAGGGACACCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCGACACTAGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATCTACAGCACATCCAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATACGATCTTCTGTCCAAAATGCTGGAGTATGATCCTCGAAAGCGTATAACAGCAGCCCAAGCCCTAGAGCATGAGTATTTTCGTTTAGAACCTCTTCCGGGATACAATGCTCTGGTACCGATCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCTGTGGACACAACCACAGATTTTGAGGGAACAACTAACCTTCAACCTTCACAAACGGTAACATCTGGAAATACTGTAAACATGCAAGGTGCTCATATGGCAAGATCTGTCCCTCGGGCAATGGGAGTTGGCATGCCTAGGATGCCGCATCAGAGCATGGCTGCCTACAACCTTGCATCTCAGGCTGGGATGGGTATGAATCCTGGTGGCATCCCTATGCAGCGAGGTGTCTCTTCCCAAGCTCATCAGCAACAACAGTTAAGGAGAAAAGATCCTGGAATGGGAATGTCTGGTTATCCTCCCCAGCAGAAACAACAAAGACGAAATGACAAGTTATGTTCAACTGTTACGCTAGGGCAAAATAGTTCAAATAAGTTGCCTCCTCCGCCTCAAGACTTCGAAAAAAAGCAGAATAGTACTATGAATACTCTATGGTTGCAGGAAGTTGCTGCACAGAAAAAAATGGGAGGTAAGATCGTTTCGTTTGGAGGCATCAATGTTTTCTCGGTACTAAGCTACCTTGATCTCGATATAGATAGGCGACTTGGCTTCCAGAGAAACTAG 1695 44.84 MGDGNNTNRGLVSANAANRNTTNNSNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNALVPIQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVTSGNTVNMQGAHMARSVPRAMGVGMPRMPHQSMAAYNLASQAGMGMNPGGIPMQRGVSSQAHQQQQLRRKDPGMGMSGYPPQQKQQRRNDKLCSTVTLGQNSSNKLPPPPQDFEKKQNSTMNTLWLQEVAAQKKMGGKIVSFGGINVFSVLSYLDLDIDRRLGFQRN 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3866725 3879186 + ClG42_04g0015500.10 Clacu04g0155 246552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0155 564 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Clacu04g0155 564 FunFam Putative cyclin-dependent kinase E-1 125 364 - -
Clacu04g0155 564 ProSitePatterns Protein kinases ATP-binding region signature. 46 74 IPR017441 GO:0005524(InterPro)
Clacu04g0155 564 SUPERFAMILY Protein kinase-like (PK-like) 35 352 IPR011009 -
Clacu04g0155 564 FunFam Cyclin-dependent kinase e-1 28 124 - -
Clacu04g0155 564 MobiDBLite consensus disorder prediction 494 513 - -
Clacu04g0155 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0155 564 ProSiteProfiles Protein kinase domain profile. 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0155 564 Pfam Protein kinase domain 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0155 564 MobiDBLite consensus disorder prediction 447 488 - -
Clacu04g0155 564 CDD STKc_CDK8_like 39 351 - -
Clacu04g0155 564 Gene3D Transferase(Phosphotransferase) domain 1 123 362 - -
Clacu04g0155 564 MobiDBLite consensus disorder prediction 450 464 - -
Clacu04g0155 564 PANTHER CELL DIVISION PROTEIN KINASE 39 351 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Clacu04g0155 564 SMART serkin_6 40 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0155 Clacu-Chr4:3866725 Clacu08g1882 Clacu-Chr8:28070447 2.20E-69 dispersed
Clacu04g0155 Clacu-Chr4:3866725 Clacu04g1264 Clacu-Chr4:26742201 1.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73474 PF00069 Pkinase 2.80E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0155 K02208 - csv:101203984 946.036