Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0157 ATGTTGAATTATATTCATCGTCGGAATCTGATCGAAGATCGCGATTTGATGCAGCCATTATTAGTGTTGTCAAAGTCTGATAATAAGTACGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAAACGATTCTCACGGAGGAGGAATGAATGTAAATGCACAAAATTTCGTGAAAAATCCACCGGATTCTCTAAGAAGAATCGATCAAATCGCGAAAAACGGCGTAAATTCCGGTAATCTGACGTCGACAGTGAATGCTGAGATTCACTCCAGTCAGCCAGGGGGATCGATTGCGCCAATTCCGACCAGCACATCAGCGACGAACTTGAAGAACCTAAACAATAACAACAACAGCAACAATAACAACAACTCTGGTTTCATGGCGACGAAGGGCGGTGGCAGCGGAGGAAATAATTATCGTTGTGACAGCATGGAGACGCCGGGAGTGGTGATAAAGCCGCACACTGGCGGAGATGTGCGGTGGGATGCCATTAACATGGTGTCGAAAGGAGGGGCTTTGAATCTAAGCCATTTCCAGTTATTGAAGAGGCTTGGTTATGGGGATATTGGAAGCGTTTATTTGGTTGAATTGAGAGGAACTGATACATTTTTCGCCATGAAAGTGATGGATAAAGCTTCATTAGCAAGTAGGAATAAGCTTTTGAGGGCACAAACAGAAAGGGAAATTCTAGGGCTTTTGGATCATCCATTTTTGCCTACTCTCTATTCCTATTTTGAAACAGATAAGTTCTATTGTTTGGTTATGGAGTTTTGTAGTGGTGGTAATCTTCATTCTCTTCGACAAAAGCAACCTAATAAGTATTTTACAGAAGAAGCTGCCAGATTCTATGCATCGGAGGTTCTATTAGCACTGGAATACCTTCATATGTTAGGCATAGTCTATAGAGATTTGAAACCCGAAAATCTCTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGATCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTTGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCGCCACCGGCAATACCGGCGCCAATGGCGGAGGCAGCGGTGGTATCCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAACCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCTCCCTCCCTGAACTCATGGCCGAGCCTACCAACGTCAGATCTATGTCCTTCGTCGGCACTCACGAGTATCTCGCTCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGAATCTTCCTCTACGAGCTTCTCCACGGAACCACGCCTTTCAAAGGATCTGGAAATAGAGCTACTCTGTTCAACGTCGTCGAACAACCACTCAGATTCCCCGATGCGCCGCAAGTCAGTCTAGCCGCTAGAGATCTGATCAGAGGGCTCCTCGTCAAGGAGCCGCAAAAAAGAATCGCATATCGGAGAGGCGCAACTGAGATTAAACAGCATCCTTTCTTCGACGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTCCCGGAGCCGCTCGATTTCTCGCAGTTCGCTAGAAAGAAGAACTGCACCGGAGCGGCGGAAGACAAGAAACCGGTGGAAATACCGGCGGCTACGTCGTCGACCACGGCAACCCCGGCGGCGGCGGAGAATTCTTCGCCTTCTACTGGTAGCGATCCCAATTACGTGGATTTTGAGTACTTCTAG 1788 49.16 MLNYIHRRNLIEDRDLMQPLLVLSKSDNKYDGSEMFNNTSKGENDSHGGGMNVNAQNFVKNPPDSLRRIDQIAKNGVNSGNLTSTVNAEIHSSQPGGSIAPIPTSTSATNLKNLNNNNNSNNNNNSGFMATKGGGSGGNNYRCDSMETPGVVIKPHTGGDVRWDAINMVSKGGALNLSHFQLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSATGNTGANGGGSGGILDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPDAPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPLDFSQFARKKNCTGAAEDKKPVEIPAATSSTTATPAAAENSSPSTGSDPNYVDFEYF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3912043 3914158 - ClG42_04g0015700.10 Clacu04g0157 246554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0157 595 FunFam Serine/threonine-protein kinase AGC1-5 178 263 - -
Clacu04g0157 595 SMART serkin_6 180 519 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0157 595 Gene3D Phosphorylase Kinase; domain 1 178 263 - -
Clacu04g0157 595 Gene3D Transferase(Phosphotransferase) domain 1 394 537 - -
Clacu04g0157 595 MobiDBLite consensus disorder prediction 552 595 - -
Clacu04g0157 595 FunFam Serine/threonine-protein kinase AGC1-7 412 537 - -
Clacu04g0157 595 SUPERFAMILY Protein kinase-like (PK-like) 177 553 IPR011009 -
Clacu04g0157 595 FunFam serine/threonine-protein kinase D6PK-like 264 331 - -
Clacu04g0157 595 MobiDBLite consensus disorder prediction 92 133 - -
Clacu04g0157 595 PANTHER FLIPPASE KINASE 1-RELATED 117 543 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu04g0157 595 ProSiteProfiles Protein kinase domain profile. 180 519 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0157 595 Pfam Protein kinase domain 368 519 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0157 595 Pfam Protein kinase domain 181 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu04g0157 595 MobiDBLite consensus disorder prediction 563 587 - -
Clacu04g0157 595 Gene3D Transferase(Phosphotransferase) domain 1 264 333 - -
Clacu04g0157 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu04g0157 595 CDD STKc_phototropin_like 178 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0157 Clacu-Chr4:3912043 Clacu10g1374 Clacu-Chr10:26810597 1.60E-147 dispersed
Clacu04g0157 Clacu-Chr4:3912043 Clacu01g2192 Clacu-Chr1:33290963 2.10E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73475 PF00069 Pkinase 1.00E-21 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0157 - - - 0.0