Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0228 ATGCAGAGTAGATCACTTCAAGAGGGAGAGAGAGAGAGAGAGAGCAGAATTTCAATCACTGTAGCATCTTATCACTTTCTTCACCGATTTCCCAACCCTTCTTCCGATTTGATTCCTGCCGCAGGTGTAGGGATTTTGCTTCCTGACGAACACTATTGTGCTTGGGGTCGAACGACAACGATATATGTTCATTGGGCAGTTCGTACTGATGTAGAATGGCTGAATAATCTAAGAGCTGGTCTAGCTTTTTTAAATCTGTGCTGCATCACTGATATGATGGTTAAGGAAAATTTGCTGCAGAGAGTTGATGACAATGCTAAAGAGAATGATTGTTCGAGTATTGGGAATGAAGATTTGGGTTCTCAGTCTCGCCACAGTGTAGGGAAGGAATCTGGGGTCAGTTGTCGTGTGTGTCAATGTATTGAATCTGACAGAAGAGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCTCCAATTATGGAAGCAAGAAAATATGATGGGGATTCTAAGCCTGAGAAGCAAAGTGCAGAAAATGTTTATGATGGTTCTGAGCTGAAAAAAGATGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATCGAAATGGGTTCATGTCATCATGAAGATGTATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCACTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTACTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAAGAATATGAAGCTTTGAGGGAAAGAACTGTTAGTGGGGAACCTAATCCTATGCAGACTATTGCTGGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTAAGTGAAATCTCATTGTGGTTCAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGGCTGCTTACTGTTACGCTTGCTTGCCTCATAGCTCCTCGTGTGGGGAAGAAAACTGCGAAAAGTGGCCTTCATATTCTTCTTGGAGGAGTTTGTGCGTTAACAGTTGTGGTTTTCTTCCGCTTTTTTGTGCTAACTAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCGTCGAGGACACATGCTGCTCATACGACGTAA 1362 43.02 MQSRSLQEGERERESRISITVASYHFLHRFPNPSSDLIPAAGVGILLPDEHYCAWGRTTTIYVHWAVRTDVEWLNNLRAGLAFLNLCCITDMMVKENLLQRVDDNAKENDCSSIGNEDLGSQSRHSVGKESGVSCRVCQCIESDRRGDAVLGFLGITPPIMEARKYDGDSKPEKQSAENVYDGSELKKDVKGDSGSIKFIGPNGEVFICKADIEMGSCHHEDVLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCTAENIRTDDFRKVVSSLKEYEALRERTVSGEPNPMQTIAGTDIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTAASQVVSEHLNTISENVVHSENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7217422 7225742 + ClG42_04g0022800.10 Clacu04g0228 246625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0228 453 ProSiteProfiles Zinc finger RING-CH-type profile. 201 265 IPR011016 GO:0008270(InterPro)
Clacu04g0228 453 Pfam RING-variant domain 224 258 IPR011016 GO:0008270(InterPro)
Clacu04g0228 453 PANTHER ZINC FINGER, RING-CH-TYPE 118 442 - -
Clacu04g0228 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 262 IPR013083 -
Clacu04g0228 453 SMART ringv_2 218 259 IPR011016 GO:0008270(InterPro)
Clacu04g0228 453 SUPERFAMILY RING/U-box 226 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0228 Clacu-Chr4:7217422 Clacu10g2134 Clacu-Chr10:34544554 8.70E-08 dispersed
Clacu04g0228 Clacu-Chr4:7217422 Clacu11g0794 Clacu-Chr11:7839161 6.00E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0228 - - - 0.0