Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0269 ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTTTGCCGGGCTAACCCTTCCGATATGGAGACGATCACTTGCAAAACTTGCGTTACTCCTTGGCATGTCGATTGTCTGTCAAATCCCCCTGAAACCCTAGCTTGTACTCTTCAATGGGACTGTCCCGACTGTTCACCGCCTCCTAAACATGCATCCCTTCCTCCGCCGTTCAATTCTTCACTCCCAACTCTGCCTTCTAATGACCTCATTGCTGCGATTCGAGCCATTGAGGCCGATTCTTCCCTTACTGACGGCGAGAAGGCAAAGAAACGCCAGGAGCTGCTTACCGGAAAGTCACGGTCCGACGAGAATGATCTTAAGAGAAAACAAGGAGACGATGTTTTGGATTTGTTTGATGAGAGATTGAACTGTTCTTTCTGCATTCAGTTACCTGATAGGCCAGTCACTACTCCATGTGGCCACAATTTTTGCTTAAAATGTTTCCAGAAGTGGATTGGACTAGGAAAGAACACTTGTGCAAAGTGCCGCTGTGTGATTCCTGCTAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGTTTCTGGAGGACCTCAGAAGGCTTATCATAATGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCCGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGCCAATGGGGTGCTCACTTTCCACATATTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACTCTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATATAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGTTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAAGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCATCAATTCCAGAGTTGAAAAAAGCGACAAATATTACAGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGCCGGTGGAAGTGGACCAAACCTCCCCCGACAAGCATGAGACCAGTTGAAACCGAAGATTCTTCCTCTGGGAAGAGGTCAAGGAGAAAAATTAGGCAATCTCATGACATAAACGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTTGGGAGGTGATGAATCTGCCAATTACTACCCCATGTGCCCATAACTTCTGCAAATCATGCTTGGAAGGTGCTTTTGCGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGAGTCTTAGATCCCGAAAGAATGTCATGACTTGTCCTTGTTGTCCGATGGATATATCAGATTTTCTACAGAATCTTCAGGTGAATAGAGATTTGTTGGATGTGATTGAGTCGTTGAAAGGTAAGCTTGAAGAAGAAGGGGATGAATCTGAAAAGCTGTGTGAAGAAGAGATAGATAGGGAAGAGGAGAATGAGGGAAAAGATGAAGTGGAAAAAAGAAAGCAAGCAAAGGTGGTGGTTAATGATGGGGAGGAAAAACCAGTCATTTGA 1929 44.74 MAQVSQLPCDGDGICMLCRANPSDMETITCKTCVTPWHVDCLSNPPETLACTLQWDCPDCSPPPKHASLPPPFNSSLPTLPSNDLIAAIRAIEADSSLTDGEKAKKRQELLTGKSRSDENDLKRKQGDDVLDLFDERLNCSFCIQLPDRPVTTPCGHNFCLKCFQKWIGLGKNTCAKCRCVIPAKMASQPRINSTLVVAIRMAKLSKSFVSGGPQKAYHNVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHIAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYSGSGGRDLSGNKRTSKDQSFDQKFEKYNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPSIPELKKATNITERKEGPSWDFDEKDSRWKWTKPPPTSMRPVETEDSSSGKRSRRKIRQSHDINVRERLLKEFSCLICWEVMNLPITTPCAHNFCKSCLEGAFAGKTFLRERSSGGRSLRSRKNVMTCPCCPMDISDFLQNLQVNRDLLDVIESLKGKLEEEGDESEKLCEEEIDREEENEGKDEVEKRKQAKVVVNDGEEKPVI 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8394247 8405088 - ClG42_04g0026900.10 Clacu04g0269 246666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0269 642 SUPERFAMILY RING/U-box 505 593 - -
Clacu04g0269 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 207 IPR013083 -
Clacu04g0269 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 599 IPR013083 -
Clacu04g0269 642 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 424 438 - -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 602 617 - -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 424 495 - -
Clacu04g0269 642 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 239 434 - -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 100 123 - -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 596 642 - -
Clacu04g0269 642 Pfam Zinc finger, C3HC4 type (RING finger) 140 178 IPR018957 GO:0046872(InterPro)
Clacu04g0269 642 Gene3D - 239 435 IPR036987 -
Clacu04g0269 642 Coils Coil 582 609 - -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 618 642 - -
Clacu04g0269 642 MobiDBLite consensus disorder prediction 445 468 - -
Clacu04g0269 642 ProSitePatterns Zinc finger RING-type signature. 527 536 IPR017907 -
Clacu04g0269 642 CDD RING-HC_ORTHRUS_rpt1 136 183 IPR047498 -
Clacu04g0269 642 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Clacu04g0269 642 SMART ring_2 140 178 IPR001841 -
Clacu04g0269 642 SMART ring_2 512 568 IPR001841 -
Clacu04g0269 642 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 91 207 - -
Clacu04g0269 642 SUPERFAMILY RING/U-box 131 186 - -
Clacu04g0269 642 ProSiteProfiles Zinc finger RING-type profile. 140 179 IPR001841 -
Clacu04g0269 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Clacu04g0269 642 SUPERFAMILY PUA domain-like 242 439 IPR015947 -
Clacu04g0269 642 ProSiteProfiles Zinc finger RING-type profile. 512 568 IPR001841 -
Clacu04g0269 642 Pfam RING-type zinc-finger 512 543 IPR027370 -
Clacu04g0269 642 Pfam SAD/SRA domain 270 419 IPR003105 -
Clacu04g0269 642 ProSiteProfiles YDG domain profile. 268 416 IPR003105 -
Clacu04g0269 642 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Clacu04g0269 642 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 619 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Clacu04g0269 642 SMART G9a_1 263 420 IPR003105 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0269 Clacu-Chr4:8394247 Clacu11g0214 Clacu-Chr11:1871019 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0269 K10638 - csv:101220457 1172.53