Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0304 ATGATACCAATGTCAGCGTCAAAATGGATGAGTTTAGTTAGTATTGTGTTGTTTTTGGGAGTAAGTTTAAGATTTAGAGGTGTAAATGGGTTGAGTATGGGGTATTACTTGATGAGTTGTCCCTTTGTGGATCCTATTGTGAAGAATACTGTTAATAGAGCTCTTCAAAATGATCCCACTTTGGCTGCTTCTCTCATTCGAATGCATTTTCATGACTGTTTCGTTGAGGGATGCGATGGTTCAATACTGATCGATTCGACACGAGACAACACAGCAGAAAAAGACTCTCCTGCTAACCTCAGTTTACGAGGTTACGAGGTTATTGATGAGATTAAGGAGCAACTCGAGAGCCAATGTCCCGGTGTTGTTTCTTGTGCTGACATTATTGCTATGGCTGCTAGAGATGCTGTCTTTTGGGCGGGGGGTCCGTTTTATGAGATACCGAAGGGAAGAAAAGACGGGAGCAGATCAAGAATCGAAGACACCGTCAATTTGCCTTCGCCTTTCTTAAATGCATCTCAGCTTATTAATACCTTTGCCCAACGCGGCTTCACTGCTCAGCAAATGGTCGCACTTTCTGGGGCGCATACATTGGGAGTGGCGAGATGCATATCGTTCAAAGGGAGATTGGACGGCAACGACCCTCTTTTGAGTCCAAACTTCGGAAGAGCGCTATCAAGAACATGCAGCAATGGCGACAACGCAGTACAAACATTCGACGCCACACCCGACAGCTTTGACAACGTGTATTACAACGCGCTATCGAGAGGCGCTGGAGTCCTGTTTTCCGACCAGACATTGTTTGCTAGCCCTCGTACGAGGGGCATTGTCACTGCCTACGCCATGAACCAAGCTTTATTCTTCATGGACTTTCAACAAGCCATCATCAAAATGGGCCTCCTCGATGTCAAAGAAGGTTATAGAGGCCAAGTTCGTCGCAACTGCCGTAGAGTTAATTGA 960 45.83 MIPMSASKWMSLVSIVLFLGVSLRFRGVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLIRMHFHDCFVEGCDGSILIDSTRDNTAEKDSPANLSLRGYEVIDEIKEQLESQCPGVVSCADIIAMAARDAVFWAGGPFYEIPKGRKDGSRSRIEDTVNLPSPFLNASQLINTFAQRGFTAQQMVALSGAHTLGVARCISFKGRLDGNDPLLSPNFGRALSRTCSNGDNAVQTFDATPDSFDNVYYNALSRGAGVLFSDQTLFASPRTRGIVTAYAMNQALFFMDFQQAIIKMGLLDVKEGYRGQVRRNCRRVN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10905646 10910320 - ClG42_04g0030400.10 Clacu04g0304 246701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0304 319 FunFam Peroxidase 34 172 - -
Clacu04g0304 319 CDD secretory_peroxidase 30 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu04g0304 319 PANTHER PEROXIDASE 25-RELATED 23 315 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu04g0304 319 FunFam Peroxidase 166 298 - -
Clacu04g0304 319 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 Gene3D - 35 319 - -
Clacu04g0304 319 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 Pfam Peroxidase 47 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 ProSiteProfiles Plant heme peroxidase family profile. 30 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 SUPERFAMILY Heme-dependent peroxidases 30 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu04g0304 319 Gene3D Peroxidase, domain 2 166 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0304 Clacu-Chr4:10905646 Clacu05g0911 Clacu-Chr5:8078153 5.10E-71 dispersed
Clacu04g0304 Clacu-Chr4:10905646 Clacu08g1576 Clacu-Chr8:25585299 2.30E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0304 K00430 - csv:101202852 614.764