Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0345 ATGGGAACCCCGGAATTCCCTAATCTCGGAAAGCATTGCAACTTTCAGGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTAACCAGGTCTTCTGTTTGGAGCATCGTAGCTACAATAGGCATAGTTGTCCAAAAGCGGATAAATGGGATGTCACCGTTGTCATTTGTCCTCTGTGTGCCAAAGGAGTTCGTCTAATTCCAGAACAAGATCCAAACATTACTTGGGAGGTACATGTAAACACTGAATGTGACCCATCAAATTACGATAAAGTCACAAAGAAGAAAAAATGCCCTGTACCTCGCTGCAGGGAGTTTTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTTGGTAGACCATTGTTTGAAGCATCGGTTTGGACCTGACCATAAATGTCCTGGACCCAAAAAACCTGAACCAGCAGGTTTTCCATTTGTTGGTCTATTAAGTAGAAGTAGAAAGGAAGAGAAAGGGCCTAAGAAAGCATTGCCCACCTCATCTTCCTCTAAGTGGACTACAGCCTTCCTTAATGCAGCCTCATCTGTTAAAGCCTCAGCCGAGGCAAGCATGACAAAGTTGTCAAATGAATTCAGTCAAACTTGGATCACATCTGGTAGCAGCAGCAACGGTAGAGGTGGAAATGGACAAGTTGAGCAATGTCCACAATGTAGCTCTAAGTTTTCTTCGGTTTCATCGTTAATAGACCATGTTGAAAAAGTTCATGAAAGAGGTGGAAATCGACCTGGGGCAAAGACGGTTGTGATCGATGCATGTCCAAAGTGTAGTAGAGGCTTTGTCGATCCCGTTGCCCTCGTGGAGCATATTGAGAAGGATCATGGTGGCACTTCAAGAGCTTGA 873 44.33 MGTPEFPNLGKHCNFQDCKQIDFLPFTCDCCNQVFCLEHRSYNRHSCPKADKWDVTVVICPLCAKGVRLIPEQDPNITWEVHVNTECDPSNYDKVTKKKKCPVPRCREFLTFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKKPEPAGFPFVGLLSRSRKEEKGPKKALPTSSSSKWTTAFLNAASSVKASAEASMTKLSNEFSQTWITSGSSSNGRGGNGQVEQCPQCSSKFSSVSSLIDHVEKVHERGGNRPGAKTVVIDACPKCSRGFVDPVALVEHIEKDHGGTSRA 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12302792 12304791 - ClG42_04g0034500.10 Clacu04g0345 246742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0345 290 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 249 - GO:0005737(PANTHER)
Clacu04g0345 290 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
Clacu04g0345 290 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
Clacu04g0345 290 Gene3D - 2 59 IPR035896 -
Clacu04g0345 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 289 IPR013087 -
Clacu04g0345 290 ProSitePatterns Zinc finger C2H2 type domain signature. 225 246 IPR013087 -
Clacu04g0345 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 246 IPR013087 -
Clacu04g0345 290 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270(InterPro)
Clacu04g0345 290 Pfam AN1-like Zinc finger 101 142 IPR000058 GO:0008270(InterPro)
Clacu04g0345 290 SUPERFAMILY AN1-like Zinc finger 4 60 IPR035896 -
Clacu04g0345 290 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Clacu04g0345 290 Gene3D - 80 147 IPR035896 -
Clacu04g0345 290 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
Clacu04g0345 290 Gene3D Classic Zinc Finger 189 289 - -
Clacu04g0345 290 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
Clacu04g0345 290 SMART c2h2final6 223 246 IPR013087 -
Clacu04g0345 290 SMART c2h2final6 261 284 IPR013087 -
Clacu04g0345 290 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0345 Clacu-Chr4:12302792 Clacu10g1451 Clacu-Chr10:27659410 1.10E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47486 PF01428 zf-AN1 1.50E-06 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0345 - - - 0.0