Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu04g0354 | ATGGAGGTCGATACTAATTCTGGGAAACCGTCGAAACAGATTGGGGGTGGTCAGGTTTGTCAGATCTGCAGTGATTCCGTCGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCAGTCTGCCGTCCATGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAGGCAGGGGAAGATGGTGATGGTAATGGAGTGGCAGGGGCTCAAGAAAGGCATCATAAGATGCCAGAGCGCACCCTTAGCTGGGATACTAATTATGATAAGGAAGGATCTTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTCTCGGCTGCATCTCCTGAGCGGCTCTCCATGGCATCTCCCGAAAGTGGGAGCCGGGCTAACTATAGAATCATGGATCAATCGAGAGACTCGGGTTCGGCTAGATTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAAGACAAGAGTGTGCCGCCAATGAGTGTCAGTCATGCACCTTCTGAAGGGAGGGGTGGAGCTGATTTTGATGCCAGCACAGATGTCGTAATCGATGATTCTTTACTAAATGATGAAGCTCGCCAGCCTTTGTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAATCCTTATAGGATGGTCATCGTTCTACGGCTTATTATTCTTTGCATCTTCTTGCACTATCGGATCACAAATCCAGTTCCAAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATTTGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAGTGGCTCCCGGTCAATCGTGAGACATATCTTGATAGACTTGCTCTAAGATATGATCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGACCCTCTGAAAGAACCTCCCCTTGTCACAGCCAATACGGTCCTATCAATTCTCTCTGTCGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGAGCTGCCATGTTAACATTTGAAGCCTTATCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCAAGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCAACCATCATTTGTGAAGGAACGGAGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTATCAATGGACTTGTAGCTAAGGCTCAGAAAGTTCCAGATGAAGGGTGGGTCATGCAAGATGGTACGCCATGGCCTGGAAATAACACGAGAGATCATCCAGGAATGATACAGGTTTTCTTGGGGCACAGTGGAGGACTTGATACTGAGGGTAATGAGCTTCCACGTTTAGTTTATGTTTCTCGTGAGAAACGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGTGTATCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGTAAATCAGTTTGCTATGTTCAGTTTCCTCAGAGGTTTGATGGAATTGATAGAAATGATCGATATGCCAACCGAAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGTATCCAAGGTCCGGTGTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCATTGTATGGCTATGAACCCCCTCTCAAGCCCAAGCATAAAAAGCCAGGGCTATTCTCCAGTTGCTTTGGGAAATCAAAAAAGAAAAGTTCTAAATCGAAAAGAAAGGATTCTGATAAGAAGCAAACTAGTAAAAATGTTGATCCCACCGTGCCAATATTCAACCTTGAAGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGACGAGAAATCGCTACTAATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAAAATGGTGGCGTGCCACAGTCTGCCACTCCGGAATCTCTCCTTAAAGAAGCAATTCATGTCATCAGTTGCGGATATGAGGATAAAACAGACTGGGGAAGTGAAATTGGATGGATCTATGGTTCTGTCACAGAAGATATTTTGACAGGGTTCAAGATGCATGCCCGTGGTTGGAGATCAATCTATTGCATCCCGGACCGTCCCGCATTTAAAGGATCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTTGAAATTCTTTTCAGTCGGCATTGCCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTATCCAATAACGTCCATTCCGCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACCGGAAAGTTTATTATTCCCCAGATCAGCAATCTTGCCAGCATCTGGTTCATTTCGCTCTTTCTTTCCATCTTTGCTACTGATCACACGACTTATCTTCTGTTTTCGTCCCTGAACTGGTATCTCGAAGCTAATGCAGGATCCGACCGTTTATCTTGA | 2703 | 44.54 | MEVDTNSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAGEDGDGNGVAGAQERHHKMPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATDHTTYLLFSSLNWYLEANAGSDRLS | 900 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 12458353 | 12464431 | - | ClG42_04g0035400.10 | Clacu04g0354 | 246751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu04g0354 | 900 | SUPERFAMILY | RING/U-box | 7 | 88 | - | - | |
| Clacu04g0354 | 900 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 440 | 613 | IPR029044 | - | |
| Clacu04g0354 | 900 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 229 | 880 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
| Clacu04g0354 | 900 | FunFam | Cellulose synthase | 439 | 613 | - | - | |
| Clacu04g0354 | 900 | ProSiteProfiles | Zinc finger RING-type profile. | 20 | 66 | IPR001841 | - | |
| Clacu04g0354 | 900 | CDD | mRING-HC-C4C4_CesA | 18 | 68 | - | - | |
| Clacu04g0354 | 900 | MobiDBLite | consensus disorder prediction | 623 | 655 | - | - | |
| Clacu04g0354 | 900 | Pfam | Zinc-binding RING-finger | 10 | 86 | IPR027934 | - | |
| Clacu04g0354 | 900 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 336 | 858 | IPR029044 | - | |
| Clacu04g0354 | 900 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 93 | IPR013083 | - | |
| Clacu04g0354 | 900 | MobiDBLite | consensus disorder prediction | 73 | 101 | - | - | |
| Clacu04g0354 | 900 | Pfam | Cellulose synthase | 322 | 875 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0928 | Clacu-Chr2:11894236 | Clacu04g0354 | Clacu-Chr4:12458353 | 1.40E-103 | dispersed | |
| Clacu03g0750 | Clacu-Chr3:8352377 | Clacu04g0354 | Clacu-Chr4:12458353 | 5.00E-227 | dispersed | |
| Clacu04g0354 | Clacu-Chr4:12458353 | Clacu09g0412 | Clacu-Chr9:3645744 | 0.00E+00 | dispersed | |
| Clacu04g0354 | Clacu-Chr4:12458353 | Clacu02g0924 | Clacu-Chr2:11765247 | 3.60E-98 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu04g0354 | K10999 | - | csv:101211779 | 1756.88 |