Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0376 ATGTTTGTCCCCAAACAAATTCCTCTTCCTCATCCTCAAACACCAAAATCCACCATGGGAAGAGGAAGAGTCGAGATCAAGAAGATTGAGAATATCAACAGCAGACAAGTTACTTTCTCTAAACGCCGTAATGGGTTGATGAAAAAGGCCAAAGAATTATCAGTTCTTTGTGATGCTGAAGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGGCTTTATGAATTCTCCAGCACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAAAGAGACTTTGGACCACCCAACACAACTGCCACCATCTGATTCTGATGCAAAGTCGTCTGAGGAGGAGATCGCAAGGCTAAAGTTAGCATATATGCAGATGAGAGGCCAGGAACTGGATAGTTTGAGCTTTATAGACCTACAAAACTTAGAAAATCAGTTGCGGGAAGGGATCGTATCTATCAAAGACAAGAAGGAGACATTACTTTTGGAGCAGCTCCAAAGGTGTAGGTCACAGCTAGAGGAGTTTCAGCAGAGAAACAATGCAACACTCCTGGAGTCCAGCCCCCTTCAGAGATCCTACCTTTCGGATTCGAAAACCGCTTCTACGAACGAGACTGAGGCCGAGACCGAGGCAGAGGAAAATGACCGCTCAGAAATTTCCTTGCATCTGGGGTTGTCATTGAATGGTCGACAAAAAAGGAAACGATCGGTTGAAGGTGCGAGCAACGACACAACATGCAGTCAAGTAGACTTGGGAAGGGGATGA 780 45.51 MFVPKQIPLPHPQTPKSTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPKETLDHPTQLPPSDSDAKSSEEEIARLKLAYMQMRGQELDSLSFIDLQNLENQLREGIVSIKDKKETLLLEQLQRCRSQLEEFQQRNNATLLESSPLQRSYLSDSKTASTNETEAETEAEENDRSEISLHLGLSLNGRQKRKRSVEGASNDTTCSQVDLGRG 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13905871 13909431 + ClG42_04g0037600.10 Clacu04g0376 246773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0376 259 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 MobiDBLite consensus disorder prediction 191 209 - -
Clacu04g0376 259 FunFam MADS-box transcription factor MADS-MC 31 100 - -
Clacu04g0376 259 SMART madsneu2 19 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 Coils Coil 144 190 - -
Clacu04g0376 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 208 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu04g0376 259 Pfam K-box region 118 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu04g0376 259 Coils Coil 114 134 - -
Clacu04g0376 259 MobiDBLite consensus disorder prediction 245 259 - -
Clacu04g0376 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 Gene3D - 31 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 MobiDBLite consensus disorder prediction 1 20 - -
Clacu04g0376 259 MobiDBLite consensus disorder prediction 191 259 - -
Clacu04g0376 259 SUPERFAMILY SRF-like 20 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu04g0376 259 ProSiteProfiles K-box domain profile. 107 198 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu04g0376 259 CDD MADS_MEF2_like 20 88 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu04g0376 259 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0376 Clacu-Chr4:13905871 Clacu10g1213 Clacu-Chr10:24916609 1.70E-32 dispersed
Clacu04g0376 Clacu-Chr4:13905871 Clacu01g2487 Clacu-Chr1:35266813 4.90E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47488 PF01486 K-box 5.00E-11 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0376 - - - 0.0