Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0453 ATGGGTTCTTCTGTTGCTGCAATGGGCATGGTTTCAGACTCCAAATTCCATGTTCTTGCTGTTGATGATAGCGTTATCGATAGGAAATTGATTGAAAGGCTCCTTAAAACCTCCTCTTACCAAGTCACTACGGTTGATTCTGGAAGTAAAGCTTTGGAGTTTCTGGGATATGACCCTGGAAATAACTCGATTCCTTCTGTTTCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCTACAGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTGCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTCTTCTTGAAACCGGTCCGACTTTCGGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAATGTGGCAAACCAGAAAAAGCAGTAGAAAATGAGCCTGATTCAGGAAGCCAATCCCAAGCACTAGAGCAACAACATCAACAACGACATGAACAAGAACAATTACGACCGCTATCGCAGCAGATCCCGACATCGCTGCAAGATCAAGATGAATTGCAATCTGTACCACTTCTGCCAACACCAACACAGGAGCAAGAACAGTTGCAATTACTCCCGCCAACACCACCGCAACAATCAAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCTCCCGATAGAACAAGGCCTAGATACAATGGTATTACCACCATGGTGTAG 795 43.14 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDPGNNSIPSVSSNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKGSTALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKCGKPEKAVENEPDSGSQSQALEQQHQQRHEQEQLRPLSQQIPTSLQDQDELQSVPLLPTPTQEQEQLQLLPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16879093 16880551 - ClG42_04g0045300.10 Clacu04g0453 246850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0453 264 MobiDBLite consensus disorder prediction 159 192 - -
Clacu04g0453 264 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
Clacu04g0453 264 Gene3D - 17 249 - -
Clacu04g0453 264 MobiDBLite consensus disorder prediction 215 264 - -
Clacu04g0453 264 SUPERFAMILY CheY-like 14 148 IPR011006 -
Clacu04g0453 264 CDD REC_typeA_ARR 18 148 - -
Clacu04g0453 264 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
Clacu04g0453 264 MobiDBLite consensus disorder prediction 215 243 - -
Clacu04g0453 264 Pfam Response regulator receiver domain 18 144 IPR001789 GO:0000160(InterPro)
Clacu04g0453 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 211 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0453 Clacu-Chr4:16879093 Clacu10g1595 Clacu-Chr10:29270778 1.20E-54 dispersed
Clacu04g0453 Clacu-Chr4:16879093 Clacu06g1772 Clacu-Chr6:28263442 1.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47492 PF00072 Response_reg 1.30E-18 CL0304 Clacu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0453 K14492 - csv:101220999 431.024