Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu04g0477 | ATGGCGGCGAATTTCTGGTCCTTGGCATGTATTCGGAGTCAGAACAGCAGCAATCTCTCTCCACGCCCTCATTATCCCTCTATGCCGAAATACCCAGCTGGGGTTTTGCTGCCGGAGAACAGCATCCCGGTCATCGAGTCGACGGCCTTCTTCTCCGTTACCGGAATGACCTGCTCTGCATGTGCTGGCTCTGTCGAGAAGGCGATCAAACGCCTCCCTGGGATTCGTGAAGCTGTTGTTGGTGTTTTGAATGCCAAAGCTCGAGTCCAATTTTACCCTAGCTTCGTTAATGTGGATCAAATATGTGAGGCAATTAATGATGCAGGCTTTGAAGCAAGTCTAGTCAATGATGATATGATTGAAAGATGTCGAATTCGTGTGATTGGAATGACTTGCACTTCGTGTTCCACAACTTTGGAATCTACGTTACAAGCAATTGATGGAGTTCAAAATGCCCAAGTTGCATTAGCCACGGAAGAAGCAGAAATTTGTTACAATCCAAGGATTTTGAACTACAATCAACTTCTCCAAGCCATTGAAGATTCTGGATTTGAAGCTTTACTTATTAGCACAGAAGAAGATGTGAGCAAGATACAGCTCCATGTTGATGGAGTGAGATCTGATAATTCAATGAGATTGATTGGGAGCTCTCTGGAAGCACTTCCTGGGGTTTTAGGTATTGATATTGACCCTGCACTCAGCAAACTTTCCTTGTCTTACAAGCCAAATGTCACGGGACCTCGGAATATAATCCAAGTGATTGAATCAACTGGATCGGGTCGATTTAAGGCGACAATATTTCCTGAAGGAGAGGGCAGAGAATCCTATAAAAAGGAGGAAATAAAGCAATATTACAGATCATTCTTCTGGAGTCTGATATTTACAATTCCAGTATTTCTAAGCTCCATGGTCTTCACTTATATACCTGGTATTAAGGATGGGCTAGATACCAAAATTGTCAATATGATGACTGTTGGAGAGCTGCTGAGGTGGGTGTTATCAACTCCTGTACAGTTCATTATTGGAAGGCGATTCTATACAGGGTCTTATAAAGCATTGCGTCATGGTTCTGCGAATATGGATGTTTTGATTGCTTTGGGGACAAATGCTGCATACTTTTATTCAGTCTACATGGTCTTAAGATCTGCAACCTCAAGTGATTTTAAGGCCACAGACTTCTTTGAGACCAGTTCCATGCTTATTTCATTCATTCTCCTTGGCAAATATCTTGAGGTCTTGGCGAAGGGAAAGACATCAGAGGCTATTGCCAAGCTTATGAAGTTGGTGCCTGAAACAGCAACCTTGCTAACTTTTGATAATGATGGAAATATCATTAGGGAAGAAGAAATTGATAGTCGATTGATACAGAAGAATGATGTGATTAAAGTCATTCCAGGGGCAAAAGTTGCTTCAGATGGAATTGTTGTTCGGGGACAAAGTCATGTCAATGAAAGCATGATTACTGGGGAAGCCAAGCCAGTGGCAAAAAGAAGGGATGATACGGTGATTGGAGGCACCTTGAACGAGAATGGGGTGCTACATGTAAGGGCAACGCACGTTGGATCTGAAAGTGCTCTTTCACAGATTGTGCGACTTGTTGAATCAGCTCAGATGGCCAAGGCTCCAGTTCAGAAAATTGCAGATCGCATCTCTAAGGTTTTTGTGCCAATGGTAATAGTCCTTTCATTGACAACATGGCTTGTCTGGTTTCTCACTGGGAAGTATGGTGGCTACCCAAGGACTTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCTCTCCAGTTTGGTATCTCAGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACTGCTGTCATGGTTGGAACAGGAGTTGGGGCATCAAAAGGTGTTTTAATCAAAGGCGGCCAAGCACTAGAGAGCGCTCACAAGGTGAATTGCATTGTGTTTGACAAGACTGGAACTCTTACAGTCGGGAAGCCAGTTGTGGTGAACACTAAGCTACTTATAAATATGGCTCTGAAAGAGTTCTGTGTGCTAGTCGCTGCCACTGAGGTAAACAGCGAGCATCCACTGGCTAAAGCCGTTGTCGAATATGCTGAAAAGTTCAAAGAAGAAGACAATAACCAAACTTGGCCTGAAGCACAAGACTTTATCTCCATTACTGGACATGGAGTTAAGGCCATCGTTCAAAACAAAGAAGTACTTGCAGGGAACAAGAGTCTTATGTTAGATCATAACATCTTCATACCTGTTGAAGCTGAAGAAATATTAAAAGAAATTGAAGAAATGGCTCAAACTGGAATTTTGGTATCCATTGATAGGAAATTGGCAGGGGTTCTTGCCATATCTGATCCACTAAAACCAAGTGCTCGCGATGTCATTTCCATACTCAAGGCCATGAAAGTTAAATCCATCATGGTGACAGGCGATAATTGGGGAACAGCAAAGTCCATAGCCAGTGAGGTTGGGATTGATGATGTAATTGCAGAAGCTAAACCTGACCAGAAAGCAGATGAAGTGAAGAAATTACAGGCTTTGGGTCATACTGTGGCAATGGTCGGAGACGGGATCAACGACTCACCAGCACTTGTGGCTGCAGATGTTGGAATGGCAATTGGTGCAGGCACAGACATTGCCATTGAGGCAGCTGACATAGTTCTCATGAAAAGCAACTTGGAGGATGTCATCACAGCCATCGACCTTTCGAGGAAAACGTTCTCCAGGATCCGTCTGAACTACATTTGGGCACTCGGTTACAATCTCCTTGGCATCCCTATAGCAGCAGGAGTTCTATTCCCATCAACTCGGTTTCGATTACCACCATGGGTTGCAGGAGCAGCAATGGCAGCCTCTTCTGTTAGTGTTGTTTGCAGTTCTCTCCTGCTCAAGTATTACAAAAGACCCAAGAAGCTTGATAGCCTTGAGATACAAGGCATTAGAGTTGAGTGA | 2946 | 43.86 | MAANFWSLACIRSQNSSNLSPRPHYPSMPKYPAGVLLPENSIPVIESTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVGVLNAKARVQFYPSFVNVDQICEAINDAGFEASLVNDDMIERCRIRVIGMTCTSCSTTLESTLQAIDGVQNAQVALATEEAEICYNPRILNYNQLLQAIEDSGFEALLISTEEDVSKIQLHVDGVRSDNSMRLIGSSLEALPGVLGIDIDPALSKLSLSYKPNVTGPRNIIQVIESTGSGRFKATIFPEGEGRESYKKEEIKQYYRSFFWSLIFTIPVFLSSMVFTYIPGIKDGLDTKIVNMMTVGELLRWVLSTPVQFIIGRRFYTGSYKALRHGSANMDVLIALGTNAAYFYSVYMVLRSATSSDFKATDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMKLVPETATLLTFDNDGNIIREEEIDSRLIQKNDVIKVIPGAKVASDGIVVRGQSHVNESMITGEAKPVAKRRDDTVIGGTLNENGVLHVRATHVGSESALSQIVRLVESAQMAKAPVQKIADRISKVFVPMVIVLSLTTWLVWFLTGKYGGYPRTWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASKGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTKLLINMALKEFCVLVAATEVNSEHPLAKAVVEYAEKFKEEDNNQTWPEAQDFISITGHGVKAIVQNKEVLAGNKSLMLDHNIFIPVEAEEILKEIEEMAQTGILVSIDRKLAGVLAISDPLKPSARDVISILKAMKVKSIMVTGDNWGTAKSIASEVGIDDVIAEAKPDQKADEVKKLQALGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTRFRLPPWVAGAAMAASSVSVVCSSLLLKYYKRPKKLDSLEIQGIRVE | 981 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17683692 | 17689122 | + | ClG42_04g0047700.10 | Clacu04g0477 | 246874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu04g0477 | 981 | ProSitePatterns | Heavy-metal-associated domain. | 127 | 156 | IPR017969 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 1 | 980 | - | - | |
Clacu04g0477 | 981 | Pfam | haloacid dehalogenase-like hydrolase | 644 | 866 | - | - | |
Clacu04g0477 | 981 | Pfam | Heavy-metal-associated domain | 51 | 111 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | Pfam | Heavy-metal-associated domain | 125 | 185 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | SUPERFAMILY | HMA, heavy metal-associated domain | 120 | 194 | IPR036163 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | SUPERFAMILY | HMA, heavy metal-associated domain | 48 | 117 | IPR036163 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | Gene3D | - | 196 | 258 | - | - | |
Clacu04g0477 | 981 | SUPERFAMILY | HAD-like | 646 | 958 | IPR036412 | - | |
Clacu04g0477 | 981 | CDD | P-type_ATPase_Cu-like | 286 | 948 | - | - | |
Clacu04g0477 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 48 | 73 | - | - | |
Clacu04g0477 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 145 | 166 | - | - | |
Clacu04g0477 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 74 | 97 | - | - | |
Clacu04g0477 | 981 | PRINTS | Copper-transporting ATPase 1 signature | 103 | 123 | - | - | |
Clacu04g0477 | 981 | Pfam | E1-E2 ATPase | 428 | 625 | - | - | |
Clacu04g0477 | 981 | Gene3D | - | 120 | 193 | - | - | |
Clacu04g0477 | 981 | Gene3D | - | 46 | 118 | - | - | |
Clacu04g0477 | 981 | ProSiteProfiles | Heavy-metal-associated domain profile. | 196 | 262 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | CDD | HMA | 51 | 113 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | NCBIfam | HAD-IC family P-type ATPase | 400 | 933 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Clacu04g0477 | 981 | FunFam | Copper-transporting ATPase HMA5 | 46 | 117 | - | - | |
Clacu04g0477 | 981 | NCBIfam | copper ion binding protein | 51 | 112 | IPR006122 | GO:0005507(InterPro) | |
Clacu04g0477 | 981 | FunFam | Probable copper-transporting ATPase HMA5 | 752 | 909 | - | - | |
Clacu04g0477 | 981 | Gene3D | - | 614 | 909 | IPR023214 | - | |
Clacu04g0477 | 981 | SUPERFAMILY | HMA, heavy metal-associated domain | 192 | 259 | IPR036163 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | Gene3D | - | 415 | 537 | - | - | |
Clacu04g0477 | 981 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 649 | 655 | IPR018303 | - | |
Clacu04g0477 | 981 | Gene3D | - | 733 | 783 | IPR023299 | GO:0000166(InterPro) | |
Clacu04g0477 | 981 | Gene3D | - | 654 | 732 | IPR023299 | GO:0000166(InterPro) | |
Clacu04g0477 | 981 | SFLD | Haloacid Dehalogenase | 629 | 904 | - | - | |
Clacu04g0477 | 981 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 392 | 920 | IPR023298 | - | |
Clacu04g0477 | 981 | ProSiteProfiles | Heavy-metal-associated domain profile. | 47 | 113 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | NCBIfam | heavy metal translocating P-type ATPase | 360 | 961 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) | |
Clacu04g0477 | 981 | ProSitePatterns | Heavy-metal-associated domain. | 53 | 82 | IPR017969 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | FunFam | Copper-transporting ATPase 1, putative | 415 | 537 | - | - | |
Clacu04g0477 | 981 | FunFam | ATPase copper transporting beta | 119 | 193 | - | - | |
Clacu04g0477 | 981 | SUPERFAMILY | Calcium ATPase, transduction domain A | 447 | 533 | IPR008250 | - | |
Clacu04g0477 | 981 | ProSiteProfiles | Heavy-metal-associated domain profile. | 121 | 187 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | CDD | HMA | 125 | 186 | IPR006121 | GO:0046872(InterPro) | |
Clacu04g0477 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 799 | 809 | - | - | |
Clacu04g0477 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 875 | 887 | - | - | |
Clacu04g0477 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 788 | - | - | |
Clacu04g0477 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 852 | 871 | - | - | |
Clacu04g0477 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 497 | - | - | |
Clacu04g0477 | 981 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 661 | - | - | |
Clacu04g0477 | 981 | SFLD | p-type atpase | 629 | 904 | IPR044492 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0281 | Clacu-Chr1:2755620 | Clacu04g0477 | Clacu-Chr4:17683692 | 0.00E+00 | dispersed | |
Clacu01g2640 | Clacu-Chr1:36568848 | Clacu04g0477 | Clacu-Chr4:17683692 | 6.40E-237 | dispersed | |
Clacu04g0477 | Clacu-Chr4:17683692 | Clacu10g0933 | Clacu-Chr10:19299592 | 1.30E-104 | dispersed | |
Clacu04g0477 | Clacu-Chr4:17683692 | Clacu02g1268 | Clacu-Chr2:25328539 | 3.70E-245 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu04g0477 | K17686 | - | csv:101218801 | 1790.39 |