Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0547 ATGGACTTCTTACAGTCTCTGGATCCTCAAATCCTTCTAGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTTTCTATGTATTATCCTCGTCCAAAAAAAGCAAATCCAGAGGTTGCTTGAATCCAGAGGTTTTCAAGGAGTTTAAACTTGTCAAGCGCCTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCGAATCCTACTTCAGTTCTAGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCGTACACACCTATTACTTTGGATTCTGATGTTGGATATTTTGAATTGGTCATAAAGATGTATCCTCAAGGAAGGATGTCACACCATTTCCGCCAGATGCGTGTAGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCCGGCGAGGTCAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACGCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCAAATGACAAAACGAAGGTACATCTCATTTATGCCAATGTCACCTATGAGGACATTCTCTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCGGATAGCTTCAAGCTCTATTATGTCTTAAACCAGCCTCCTGAAGCGTGGGATGGAGGTGTCGGATTCGTATCAAAGGAGATGATTCAAGCCCACTGCCCTGCTCCTGCTTCTGATATTCAGATTCTAAGGTGTGGACCACCACCAATGAACAAGGCCATGGCTGCTCATCTGGAAGATCTTGGATATACACCTGAGATGCTGTTCATGTTCTGA 846 45.51 MDFLQSLDPQILLGLAVAVLALAVGAFYVLSSSKKSKSRGCLNPEVFKEFKLVKRLQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGEVRAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEAWDGGVGFVSKEMIQAHCPAPASDIQILRCGPPPMNKAMAAHLEDLGYTPEMLFMF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18724820 18730295 + ClG42_04g0054700.10 Clacu04g0547 246944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0547 281 Gene3D - 140 281 IPR039261 -
Clacu04g0547 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
Clacu04g0547 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
Clacu04g0547 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
Clacu04g0547 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
Clacu04g0547 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
Clacu04g0547 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
Clacu04g0547 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Clacu04g0547 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
Clacu04g0547 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
Clacu04g0547 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
Clacu04g0547 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
Clacu04g0547 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
Clacu04g0547 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
Clacu04g0547 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
Clacu04g0547 281 CDD cyt_b5_reduct_like 50 281 - -
Clacu04g0547 281 Gene3D Translation factors 40 139 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2473 Clacu-Chr2:37616167 Clacu04g0547 Clacu-Chr4:18724820 1.30E-118 dispersed
Clacu04g0547 Clacu-Chr4:18724820 Clacu10g1653 Clacu-Chr10:29936686 4.40E-135 dispersed
Clacu04g0547 Clacu-Chr4:18724820 Clacu03g0921 Clacu-Chr3:11796166 1.40E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0547 K00326 - csv:101212569 529.25