Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0554 ATGGCTGCTTACGCTTTGCTCGGCGATTCCACCCCCCGTGTTAATGGTGGTTTTGATGATAGTCCTTTGACCAGTGCTTCCACAAATAGCAACGGCAGTGACGAACATAATCATCAACAAATTGTTCAAGTTCAAGTCCAGGTTGCTCAACCGCGGTTGCCGGTTGGAAAAATGGTGCGGAAGAGAATCGCGTCGGAGATGGAGATTGAAGGCGGCGGCGGCGGTGGAGGAGGAGTTACTGCCGCTGTCCACCCTCGGTTTTGCCGGCGGAGTTTAGCTTCTGATCGTCCTTTTGCAGGTGGAGAAAATAAGGCGAATGCGAATGCGAATTATTGTTCTTCAAACCCTAGCCATGGCGGTGGTAACCACTCCACTGTGCATAATTTAACCGCTCTGACGTCAGTTGTAATCGAAGGGTCAAATTTATCAAATCCTCCTTCTGGTTCTGATGCTACGGTATCTTCCACTACCTCCAACAATAATCTTCTTGATAGTACTCTTCCTGTTCTTCGTCCTCAGCCCCACCATCACCATTTGCAGAATCCTGCAGTCTGTGGTTTTTCTGGGTTGCCTTTGTTTCCACCGGAATTAAATCACCACCACAAGTTAAATACTCGCAATAATCCTTTTCCCCTTCCTAATCCATCTCAGGTTCTTCATAATCCTCCCACTACTGCAACTACCTCCATTATCGCCGCCGCTTCTTCCCCTATGGATGATTCCTCCGCCACCGCTTGGATCGACGGCATCATTAAGGACTTAATCCATAGCTCCACCGCCATATCCATTCCTCAGCTCATTCAGAACGTTCGTGAGATTATCTACCCTTGTAACCCCAATCTTGCGAATCTTCTTGAGTTTCGTCTTCGTACTTTGACGGACCCTAGTGTTCCTAACTTCGCCGCTGAGGATCATCGCGTGAGGAAATCCCCCTTACCGTTGCCGCCGCCGGTGGCTGGGCTGGGGTTGCAGCAGAGGCAGTTCAACCAAGAGCAGCATGAGCAAGAACAGGATTGTTCTGGATTGAAGCTTAATCTCGATTCTTCTTCTCTGCATAATCTTCCTAATTTTCCCTCTCAACCGCCGTTTCATGAGCCGTATCTTCAATGGGGAACAACCCCTCCTCCGGTCCCCACTCCCTCCGCCGCTGCCGCCGGCGAGGATGCCTTACAGCGCCTCCCTGGTCATCATCAACTTAATCTCTCTTCCATTACACCATCGCCGCTTGTTTCTCTAAACCATGTCCCTTCAAAGCCACAATCGGAACAGCAGAACTCCTGTCCGGTCAATGCAAAGGCAGCGGTGGCACAGCCAGCTCCAGCGCCACCGCCGTCCACGAGCAATAACCCTTCAGCAACTGCTTTGCTGATTAGAGAGATAAAAGAGGAGATGAGGCAACAGAAGAGAGACGAAGAAGGTTTACACCTCTTGACTTTGCTTCTTCAATGTGCAGAAGCAGTTTCTGCTGATAATTTAGAAGAAGCCAACAAGATGCTCTTGGAAATCTCCGAGTTATCAACACCGTTCGGCACATCGGCGCAGAGGGTGGCGGCGTATTTCTCAGAAGCAATGTCCGCGAGGCTTGTGAGCTCTTGTTTAGGCATATATGCAGCTCTGCCGCCGTCGTTGGTGCCTCATACACACAGCCAGAAAATAGCCTCAGCCTTCCAAGTCTTCAATGGCATAAGCCCATTTGTCAAATTCTCACACTTCACAGCCAATCAAGCCATACAAGAAGCTTTCGAAAGAGAAGAGAGAGTTCACATTATAGATCTAGACATCATGCAAGGCCTTCAATGGCCTGGCTTGTTCCACATCTTGGCATCTAGACCCGGCGGACCGCCCTACGTTCGGCTTACGGGGCTGGGGACCTCTCAGGAGGTTCTTGAAGCCACTGGCAAACGCCTCACTGAATTTGCCGAGAAGCTTGGCCTTCCCTTCGATTTCTTTCCTGTGGCTGATAAAATTGGCAATTTAGACTTGGAGAGGCTCAACGTGAGCAAAAGGGAAGCCGTTGCCGTCCATTGGATGCAACATTCTCTTTATGAAGTCACTGGTTCTGATTCCAATACGCTATGGCTTTTGCAAAGATTGGCTCCAAAAGTGGTGACGGTGGTGGAACAAGATCTGAGCCACACAGGGTCTTTCTTGGGGAGATTCGTAGAGGCCATTCATTACTATTCAGCACTGTTTGACTCATTGGGTGTGAGCTATGGCGAAGAGAGTGAAGAAAGGCACTTAGTTGAGCAGCAACTATTATCAAGGGAGATCAGAAATGTCCTCGCAGTCGGAGGGCCGTCGAGGAGCGGCGAAGTGAAGTTCCAAAACTGGAGAGAAAAGCTGCAGCAATCTGGGTTTAAAGGCATTTCCCTCGCCGGAAATGCTGCAACTCAAGCCACTCTCCTCCTCGGAATGTTCCCTTCCGATGGGTATACGCTTGTAGAAGACAATGGGACTCTGAAACTTGGGTGGAAGGATCTTTGTTTGCTCACAGCCTCGGCTTGGAAACCGCCGTTTCTTCATCATGCTGCGGCGGCTGCTGCACCGGCTGCCACCAACAACCACATTCCCCGGTACTGA 2580 50.16 MAAYALLGDSTPRVNGGFDDSPLTSASTNSNGSDEHNHQQIVQVQVQVAQPRLPVGKMVRKRIASEMEIEGGGGGGGGVTAAVHPRFCRRSLASDRPFAGGENKANANANYCSSNPSHGGGNHSTVHNLTALTSVVIEGSNLSNPPSGSDATVSSTTSNNNLLDSTLPVLRPQPHHHHLQNPAVCGFSGLPLFPPELNHHHKLNTRNNPFPLPNPSQVLHNPPTTATTSIIAAASSPMDDSSATAWIDGIIKDLIHSSTAISIPQLIQNVREIIYPCNPNLANLLEFRLRTLTDPSVPNFAAEDHRVRKSPLPLPPPVAGLGLQQRQFNQEQHEQEQDCSGLKLNLDSSSLHNLPNFPSQPPFHEPYLQWGTTPPPVPTPSAAAAGEDALQRLPGHHQLNLSSITPSPLVSLNHVPSKPQSEQQNSCPVNAKAAVAQPAPAPPPSTSNNPSATALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPSLVPHTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSQEVLEATGKRLTEFAEKLGLPFDFFPVADKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKPPFLHHAAAAAAPAATNNHIPRY 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18834148 18837160 + ClG42_04g0055400.10 Clacu04g0554 246951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0554 859 MobiDBLite consensus disorder prediction 11 37 - -
Clacu04g0554 859 MobiDBLite consensus disorder prediction 139 167 - -
Clacu04g0554 859 MobiDBLite consensus disorder prediction 399 431 - -
Clacu04g0554 859 MobiDBLite consensus disorder prediction 351 383 - -
Clacu04g0554 859 ProSiteProfiles GRAS family profile. 467 836 IPR005202 -
Clacu04g0554 859 MobiDBLite consensus disorder prediction 399 451 - -
Clacu04g0554 859 MobiDBLite consensus disorder prediction 17 37 - -
Clacu04g0554 859 MobiDBLite consensus disorder prediction 139 168 - -
Clacu04g0554 859 Pfam GRAS domain family 477 836 IPR005202 -
Clacu04g0554 859 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 459 835 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0554 Clacu-Chr4:18834148 Clacu07g1089 Clacu-Chr7:25438894 3.90E-134 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47498 PF03514 GRAS 8.00E-127 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0554 K27742 - csv:101205286 1417.14