Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu04g0556 ATGGCAGAATTAGATCAAGAAGTAGTTGACCCTCCTCCCTTCTTTCTCTGTCCCATCTCTTTGCAAATCATGAAAGACCCCGTCACGATCACCTCCGGCATAACCTACGACCGAGAAAACATTGAGAAATGGTTGTTTTCCGACAAACACAAGACGTGCCCTGTCTCACAGGTTGTCTTGTCGGATTTCAACATCACTCCCAACCATACTTTAAGACGAGTTATTCAAGCTTGGTGCACAGTCAACGCTTGTAGTGGCGTCGAGAGGATGCCAACACCCAAACCTCCGGTTGACCGGAAACAAGTCGTTAGGATTCTTGCTGATGCCAAGTTATCTCCTTTCTCTCAGCAGAATTGTCTTCGTCGTCTTCGATCTATCGCTGCGGCGAATGAAACTAATAAACGTTGCATGGAATCGGCTGGAGCTGTGGAGTTCTTGGCTGGGCTTGTGTGTAGTTCTACAACCAACGTGGAGTCTGGCTTTGAAGATTACGCGTTTGACGACATGTCGGCAAACTTGGGGGATGAGGCTTTGAGCATTCTTCACAAACTCCAGATCTCCGAATCCGCTCTCAAATTTCTGCTCTCCAACAATGGCGGCATCTTCATCTCCACCTTAACCAAAATCTTGCAAAACCGAAGCTATTCCTCCCGAGCGTATTCAATAATGCTTCTCAATTCAATGTTCGAAGTCGCAGATCAGGTTCAAATCCTCAGTCTCACCGCCGATTTCTTCATCGAAATCGTCCAAATCCTTAAAGATCAGATCTCCAAACAAGCCTCGAAATCGGCATTGAAATTGCTAATCGGTGTCTGTTCGAGTTCCAGAAACAGAGTAAAGGCGGTTCAAGCCGGTGCGGTTCCGGTTCTGATCGATCTCCTTCTCGATCTCGATTCGTCGGAGAAGCGTTTGTGCGAGATGATTCTCGTGGTGCTTGATCTGCTGTGTGGTTGCGCCGATGGCAGGGCGGAGCTGTTGAATCACGCGGCGGGGATCGCCGTCGTGTCGAAGAAGATTTTGAGAGTTTCGTCGCTCGGAAGTGAGAAGGCGGTTGGGATCTTATGGTCCGTTGCGAGATTCTCGGCGAGCCAAACCGTCATTCAGGAAATGCTGCGGCTGGGAGTTGTGACGAAGCTTTGTTTTCTGCTTCAAGTGGTCGACGCCGGAGCGAAAGCGAAAGAGAAAGCTAAAGAGATTCTGAAGCTTCATGGTCGGCCATGGCGGAATTCTTCTTGTTTGCCTTCGAGTCTGCGATCATCTTATCCACAACATTAG 1275 48.78 MAELDQEVVDPPPFFLCPISLQIMKDPVTITSGITYDRENIEKWLFSDKHKTCPVSQVVLSDFNITPNHTLRRVIQAWCTVNACSGVERMPTPKPPVDRKQVVRILADAKLSPFSQQNCLRRLRSIAAANETNKRCMESAGAVEFLAGLVCSSTTNVESGFEDYAFDDMSANLGDEALSILHKLQISESALKFLLSNNGGIFISTLTKILQNRSYSSRAYSIMLLNSMFEVADQVQILSLTADFFIEIVQILKDQISKQASKSALKLLIGVCSSSRNRVKAVQAGAVPVLIDLLLDLDSSEKRLCEMILVVLDLLCGCADGRAELLNHAAGIAVVSKKILRVSSLGSEKAVGILWSVARFSASQTVIQEMLRLGVVTKLCFLLQVVDAGAKAKEKAKEILKLHGRPWRNSSCLPSSLRSSYPQH 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18879399 18881967 + ClG42_04g0055600.10 Clacu04g0556 246953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu04g0556 424 Pfam U-box domain 12 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu04g0556 424 PANTHER WDSAM1 PROTEIN 7 416 IPR045185 GO:0061630(InterPro)
Clacu04g0556 424 Gene3D - 99 406 IPR011989 -
Clacu04g0556 424 SMART Ubox_2 14 78 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu04g0556 424 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu04g0556 424 CDD RING-Ubox_PUB 12 63 IPR045210 -
Clacu04g0556 424 SUPERFAMILY RING/U-box 3 84 - -
Clacu04g0556 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Clacu04g0556 424 SUPERFAMILY ARM repeat 103 389 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2296 Clacu-Chr2:35999190 Clacu04g0556 Clacu-Chr4:18879399 6.50E-95 dispersed
Clacu04g0556 Clacu-Chr4:18879399 Clacu05g0302 Clacu-Chr5:2590246 2.30E-55 dispersed
Clacu04g0556 Clacu-Chr4:18879399 Clacu10g1808 Clacu-Chr10:31752453 6.90E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu04g0556 - - - 0.0